C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00042O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000026028-ENSDARG00000056138 CGP 7955 9:33139641-33210425
GeneTranscriptPositionBiotype
ENSDARG00000026028 (ankrd44)
ankyrin repeat domain 44 		ENSDART00000037182 (ankrd44-201) 33139641-33191596 protein_coding
ENSDART00000142768 (ankrd44-001) 33143219-33175619 protein_coding
ENSDARG00000056138 (sf3b1)
splicing factor 3b, subunit 1 		ENSDART00000078568 (sf3b1-001) 33194931-33210425 protein_coding
ENSDART00000141105 (sf3b1-002) 33207687-33208571 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_00042O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065413-ENSG00000115524 CGP 9606 2:196967017-197435091
GeneTranscriptPositionBiotype
ENSG00000065413 (ANKRD44)
ankyrin repeat domain 44 		ENST00000282272 (ANKRD44-201) 196986662-197310797 protein_coding
ENST00000328737 (ANKRD44-002) 196994526-197198038 protein_coding
ENST00000409153 (ANKRD44-003) 197077812-197310787 protein_coding
ENST00000409919 (ANKRD44-004) 197099477-197310787 protein_coding
ENST00000422886 (ANKRD44-009) 197013511-197110844 protein_coding
ENST00000424317 (ANKRD44-001) 196967017-197122733 protein_coding
ENST00000443014 (ANKRD44-013) 197125995-197311173 protein_coding
ENST00000447713 (ANKRD44-012) 197125837-197310797 nonsense_mediated_decay
ENST00000448801 (ANKRD44-006) 196989138-197000502 protein_coding
ENST00000463879 (ANKRD44-005) 197133971-197310780 retained_intron
ENST00000473081 (ANKRD44-011) 197088749-197110830 processed_transcript
ENST00000477852 (ANKRD44-010) 197081691-197088875 processed_transcript
ENST00000486006 (ANKRD44-008) 196992678-196993638 processed_transcript
ENST00000493808 (ANKRD44-007) 196990811-196995455 processed_transcript
ENSG00000115524 (SF3B1)
splicing factor 3b, subunit 1, 155kDa 		ENST00000335508 (SF3B1-001) 197389784-197435091 protein_coding
ENST00000409915 (SF3B1-005) 197416891-197435027 protein_coding
ENST00000414174 (SF3B1-003) 197420181-197435016 nonsense_mediated_decay
ENST00000414963 (SF3B1-014) 197418796-197435079 protein_coding
ENST00000424674 (SF3B1-012) 197393052-197399028 protein_coding
ENST00000462613 (SF3B1-013) 197402022-197402452 processed_transcript
ENST00000468925 (SF3B1-008) 197407936-197408694 retained_intron
ENST00000470268 (SF3B1-002) 197409783-197420115 retained_intron
ENST00000479532 (SF3B1-007) 197392255-197393351 retained_intron
ENST00000482158 (SF3B1-010) 197416594-197418962 retained_intron
ENST00000487698 (SF3B1-004) 197418796-197435079 protein_coding
ENST00000496458 (SF3B1-011) 197397954-197398772 retained_intron
ENSG00000202434 (SNORA4)
Small nucleolar RNA SNORA4 		ENST00000365564 (SNORA4.1-203) 197404718-197404854 snoRNA
ENSG00000213104 (NPM1P46)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 46 		ENST00000399556 (NPM1P46-001) 197379701-197380892 processed_pseudogene
ENSG00000224442 (AC017035.2)
 ENST00000411999 (AC017035.2-001) 197028711-197030143 processed_pseudogene
ENSG00000225636 (HNRNPA3P15)
heterogeneous nuclear ribonucleoprotein A3 pseudogene 15 		ENST00000424470 (HNRNPA3P15-001) 197014990-197016015 processed_pseudogene
ENSG00000225979 (AC010746.3)
 ENST00000442984 (AC010746.3-001) 197311393-197312740 antisense
ENSG00000230482 (ATP5G2P3)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 3 		ENST00000429083 (ATP5G2P3-001) 197263111-197263535 processed_pseudogene
ENSG00000231621 (AC013264.2)
 ENST00000449346 (AC013264.2-001) 197197991-197199273 antisense
ENSG00000236977 (ANKRD44-IT1)
ANKRD44 intronic transcript 1 (non-protein coding) 		ENST00000428191 (ANKRD44-IT1-001) 197250858-197302519 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_00042O_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052331-ENSMUSG00000025982 CGP 10090 1:54645340-55027481
GeneTranscriptPositionBiotype
ENSMUSG00000025982 (Sf3b1)
splicing factor 3b, subunit 1 		ENSMUST00000027127 (Sf3b1-001) 54985169-55027481 protein_coding
ENSMUST00000185429 (Sf3b1-005) 54988953-54992541 retained_intron
ENSMUST00000187500 (Sf3b1-003) 55003151-55027464 retained_intron
ENSMUST00000188419 (Sf3b1-008) 55015931-55016929 retained_intron
ENSMUST00000188859 (Sf3b1-006) 55007666-55015193 retained_intron
ENSMUST00000189051 (Sf3b1-007) 55015801-55027373 processed_transcript
ENSMUST00000190175 (Sf3b1-004) 54985173-54991115 retained_intron
ENSMUST00000191303 (Sf3b1-002) 55012252-55027394 nonsense_mediated_decay
ENSMUSG00000052331 (Ankrd44)
ankyrin repeat domain 44 		ENSMUST00000044359 (Ankrd44-201) 54645342-54926387 protein_coding
ENSMUST00000177679 (Ankrd44-008) 54766792-54884711 protein_coding
ENSMUST00000177704 (Ankrd44-007) 54654911-54690947 retained_intron
ENSMUST00000177919 (Ankrd44-010) 54743299-54766423 retained_intron
ENSMUST00000178156 (Ankrd44-012) 54649097-54657687 protein_coding
ENSMUST00000178226 (Ankrd44-004) 54651669-54763728 protein_coding
ENSMUST00000178685 (Ankrd44-006) 54728987-54735644 retained_intron
ENSMUST00000178905 (Ankrd44-009) 54762368-54813443 processed_transcript
ENSMUST00000178935 (Ankrd44-003) 54735302-54926354 retained_intron
ENSMUST00000179030 (Ankrd44-001) 54645340-54926387 protein_coding
ENSMUST00000179242 (Ankrd44-011) 54667213-54723076 retained_intron
ENSMUST00000179398 (Ankrd44-013) 54722568-54724423 retained_intron
ENSMUST00000180189 (Ankrd44-005) 54760569-54768827 processed_transcript
ENSMUST00000180327 (Ankrd44-002) 54760887-54926387 retained_intron
ENSMUST00000189563 (Ankrd44-014) 54645340-54648613 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00042O_0001ENSDARG00000026028ENSDART00000037182ENSDART00000142768ENSDARG00000056138ENSDART00000078568ENSDART00000141105CIL_00042O_0002ENSG00000065413ENST00000282272ENST00000328737ENST00000409153ENST00000409919ENST00000422886ENST00000424317ENST00000443014ENST00000447713ENST00000448801ENST00000463879ENST00000473081ENST00000477852ENST00000486006ENST00000493808ENSG00000115524ENST00000335508ENST00000409915ENST00000414174ENST00000414963ENST00000424674ENST00000462613ENST00000468925ENST00000470268ENST00000479532ENST00000482158ENST00000487698ENST00000496458ENSG00000202434ENST00000365564ENSG00000213104ENST00000399556ENSG00000224442ENST00000411999ENSG00000225636ENST00000424470ENSG00000225979ENST00000442984ENSG00000230482ENST00000429083ENSG00000231621ENST00000449346ENSG00000236977ENST00000428191CIL_00042O_0003ENSMUSG00000025982ENSMUST00000027127ENSMUST00000185429ENSMUST00000187500ENSMUST00000188419ENSMUST00000188859ENSMUST00000189051ENSMUST00000190175ENSMUST00000191303ENSMUSG00000052331ENSMUST00000044359ENSMUST00000177679ENSMUST00000177704ENSMUST00000177919ENSMUST00000178156ENSMUST00000178226ENSMUST00000178685ENSMUST00000178905ENSMUST00000178935ENSMUST00000179030ENSMUST00000179242ENSMUST00000179398ENSMUST00000180189ENSMUST00000180327ENSMUST00000189563
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00042O_0001ENSDARG00000026028ENSDART00000037182ENSDART00000142768ENSDARG00000056138ENSDART00000078568CIL_00042O_0002ENSG00000065413ENST00000282272ENST00000409153ENST00000409919ENST00000422886ENST00000424317ENST00000448801ENST00000463879ENST00000477852ENSG00000115524ENST00000335508ENST00000424674ENSG00000202434ENST00000365564ENSG00000213104ENST00000399556ENSG00000224442ENST00000411999ENSG00000225636ENST00000424470ENSG00000225979ENST00000442984ENSG00000230482ENST00000429083ENSG00000231621ENST00000449346ENSG00000236977ENST00000428191CIL_00042O_0003ENSMUSG00000025982ENSMUST00000027127ENSMUST00000187500ENSMUST00000190175ENSMUSG00000052331ENSMUST00000044359ENSMUST00000177919ENSMUST00000178226ENSMUST00000178935ENSMUST00000179030ENSMUST00000180327ENSMUST00000189563
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026028 ENSDART00000037182 N/A N/A N/A 6.891±4.92 N/A N/A 2.064±1.50 6.773±2.21 N/A N/A 2.389±0.00 N/A N/A N/A
ENSDART00000142768 N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A
ENSDARG00000056138 ENSDART00000078568 N/A N/A N/A 68.271±19.41 N/A N/A 46.919±17.38 65.487±18.24 3.921±0.00 N/A 16.517±0.00 N/A N/A N/A
ENSDART00000141105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065413 ENST00000282272 1.097±0.00 1.487±0.00 N/A 0.483±0.00 1.131±0.51 1.282±0.26 0.396±0.00 0.412±0.00 1.061±0.81 1.693±0.00 0.210±0.00 0.498±0.00 0.655±0.53 0.277±0.01
ENST00000328737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409153 N/A N/A 0.808±0.00 0.958±0.00 1.328±0.00 2.435±0.00 N/A N/A N/A N/A N/A 0.908±0.00 N/A N/A
ENST00000409919 N/A N/A N/A 1.344±0.00 N/A N/A N/A N/A N/A N/A 1.683±0.00 N/A 1.144±0.00 N/A
ENST00000422886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.108±0.00 N/A N/A N/A
ENST00000424317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.665±0.00
ENST00000443014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.057±0.00 N/A N/A N/A
ENST00000463879 0.669±0.00 5.040±0.00 N/A 0.555±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477852 N/A N/A N/A N/A N/A N/A N/A 9.920±0.00 N/A N/A N/A N/A N/A N/A
ENST00000486006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115524 ENST00000335508 19.263±0.00 22.567±0.00 2.805±0.00 12.777±6.99 8.815±3.98 20.877±0.64 10.521±8.04 4.470±2.11 13.910±11.93 7.136±0.00 3.534±1.61 24.520±8.65 16.282±3.38 26.929±5.46
ENST00000409915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 104.434±29.59 30.061±0.00 50.455±11.93
ENST00000462613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202434 ENST00000365564 N/A 0.628±0.00 N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213104 ENST00000399556 0.013±0.00 0.041±0.00 N/A N/A N/A 0.025±0.00 0.024±0.00 0.067±0.00 N/A 0.026±0.00 0.096±0.00 0.061±0.00 0.049±0.00 0.037±0.00
ENSG00000224442 ENST00000411999 N/A 0.229±0.00 0.080±0.00 0.113±0.00 0.072±0.06 0.011±0.00 0.076±0.00 N/A 0.817±0.00 0.140±0.00 N/A 0.046±0.03 0.220±0.00 0.073±0.00
ENSG00000225636 ENST00000424470 N/A 0.343±0.00 0.109±0.00 0.054±0.00 0.117±0.11 0.062±0.00 N/A 0.011±0.00 0.495±0.00 0.238±0.22 0.010±0.00 0.171±0.15 N/A 0.010±0.00
ENSG00000225979 ENST00000442984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.865±0.60
ENSG00000230482 ENST00000429083 0.050±0.00 0.888±0.00 N/A 0.243±0.00 0.282±0.00 N/A N/A N/A N/A 1.739±0.00 0.045±0.00 0.176±0.00 0.193±0.00 0.177±0.00
ENSG00000231621 ENST00000449346 N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.821±0.00 N/A N/A N/A N/A
ENSG00000236977 ENST00000428191 0.243±0.00 0.847±0.00 0.132±0.00 0.266±0.03 0.251±0.11 0.069±0.00 0.057±0.04 0.312±0.16 0.361±0.34 0.176±0.00 0.106±0.00 0.034±0.00 0.121±0.00 0.281±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025982 ENSMUST00000027127 10.300±5.14 5.165±2.57 14.799±0.00 44.256±12.67 10.364±5.47 3.799±0.00 4.801±1.50 4.293±0.48 10.030±10.07 10.111±4.76 5.981±2.04 19.583±16.07 26.908±10.35 11.660±6.30
ENSMUST00000185429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187500 N/A N/A N/A 17.541±0.00 N/A N/A N/A N/A N/A N/A N/A 15.957±0.00 N/A N/A
ENSMUST00000188419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190175 12.474±1.26 9.438±1.66 18.709±0.52 N/A 21.335±6.10 16.766±3.64 5.850±0.88 8.403±0.73 6.488±3.11 18.356±1.68 N/A 19.822±3.67 20.405±0.00 4.641±0.00
ENSMUST00000191303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052331 ENSMUST00000044359 N/A N/A N/A 2.500±0.47 N/A N/A N/A N/A N/A N/A N/A 0.578±0.06 N/A N/A
ENSMUST00000177679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.939±0.07 N/A N/A
ENSMUST00000178156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.442±1.57
ENSMUST00000178685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178935 N/A 1.827±0.44 N/A N/A 4.693±0.47 1.212±0.22 N/A N/A 0.404±0.00 N/A N/A 1.787±0.00 N/A N/A
ENSMUST00000179030 5.960±0.64 1.244±0.33 4.742±0.44 3.727±0.00 8.340±1.30 2.679±1.07 1.290±0.42 3.221±0.48 0.975±0.51 21.296±1.75 0.696±0.36 2.745±1.18 1.356±0.45 0.573±0.16
ENSMUST00000179242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180327 N/A 0.874±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189563 N/A 0.899±0.12 6.392±0.61 5.951±4.10 5.880±1.52 1.874±0.22 1.160±0.24 1.864±0.32 1.222±0.60 13.385±0.37 0.682±0.29 1.125±0.38 1.133±0.71 1.250±0.00

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