C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3b, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025982 Sf3b1 10090 - 1:54985169-55027481 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027127 Sf3b1-001 54985169-55027481 protein_coding
  ENSMUST00000185429 Sf3b1-005 54988953-54992541 retained_intron
  ENSMUST00000187500 Sf3b1-003 55003151-55027464 retained_intron
  ENSMUST00000188419 Sf3b1-008 55015931-55016929 retained_intron
  ENSMUST00000188859 Sf3b1-006 55007666-55015193 retained_intron
  ENSMUST00000189051 Sf3b1-007 55015801-55027373 processed_transcript
  ENSMUST00000190175 Sf3b1-004 54985173-54991115 retained_intron
  ENSMUST00000191303 Sf3b1-002 55012252-55027394 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027127ENSMUST00000187500ENSMUST00000190175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027127 10.300±5.14 5.165±2.57 14.799±0.00 44.256±12.67 10.364±5.47 3.799±0.00 4.801±1.50 4.293±0.48 10.030±10.07 10.111±4.76 5.981±2.04 19.583±16.07 26.908±10.35 11.660±6.30
ENSMUST00000187500 N/A N/A N/A 17.541±0.00 N/A N/A N/A N/A N/A N/A N/A 15.957±0.00 N/A N/A
ENSMUST00000190175 12.474±1.26 9.438±1.66 18.709±0.52 N/A 21.335±6.10 16.766±3.64 5.850±0.88 8.403±0.73 6.488±3.11 18.356±1.68 N/A 19.822±3.67 20.405±0.00 4.641±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042O CIL_00042O_0003 CGP 1:54645340-55027481
CIL_00042R CIL_00042R_0003 CGP 1:54985169-55072702

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 ISO RNA splicing, via transesterification reactions
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005681 ISO spliceosomal complex
GO:0005689 IEA U12-type spliceosomal complex
GO:0009952 IGI anterior/posterior pattern specification
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056138 sf3b1 splicing factor 3b, subunit 1 protein_coding Danio_rerio
ENSG00000115524 SF3B1 splicing factor 3b, subunit 1, 155kDa protein_coding Homo_sapiens

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