C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid x receptor, beta a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000102075 rxrba-004 ENSDARG00000078954 7955 - 19:7871646-7895457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverENSDART00000102075
Transcript ID Heart Kidney Liver
ENSDART00000102075 1.642±0.00 27.052±0.00 1.983±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0001 CGP 19:7802938-7897380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-dependent
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077257 Rxra-001 protein_coding Mus_musculus 0 387
ENSMUST00000100251 Rxra-002 protein_coding Mus_musculus 0 387
ENSMUST00000113934 Rxra-003 protein_coding Mus_musculus 0 387
ENSMUST00000148756 Rxra-005 processed_transcript Mus_musculus 0 202
ENSMUST00000166775 Rxra-201 protein_coding Mus_musculus 0 387
ENST00000330847 NR4A3-003 protein_coding Homo_sapiens 0.00009 55
ENST00000338488 NR4A3-002 protein_coding Homo_sapiens 0.00005 55
ENST00000356384 RXRA-001 processed_transcript Homo_sapiens 0 464
ENST00000395097 NR4A3-001 protein_coding Homo_sapiens 0.00007 55
ENST00000481739 RXRA-002 protein_coding Homo_sapiens 0 464
ENST00000618101 NR4A3-201 protein_coding Homo_sapiens 0.0001 55

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