C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid x receptor, beta a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000112245 rxrba-202 ENSDARG00000078954 7955 - 19:7871577-7895541 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0001 CGP 19:7802938-7897380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077257 Rxra-001 protein_coding Mus_musculus 0 387
ENSMUST00000100251 Rxra-002 protein_coding Mus_musculus 0 387
ENSMUST00000113934 Rxra-003 protein_coding Mus_musculus 0 387
ENSMUST00000148756 Rxra-005 processed_transcript Mus_musculus 0 202
ENSMUST00000166775 Rxra-201 protein_coding Mus_musculus 0 387
ENST00000330847 NR4A3-003 protein_coding Homo_sapiens 0.00009 55
ENST00000338488 NR4A3-002 protein_coding Homo_sapiens 0.00005 55
ENST00000356384 RXRA-001 processed_transcript Homo_sapiens 0 464
ENST00000395097 NR4A3-001 protein_coding Homo_sapiens 0.00007 55
ENST00000481739 RXRA-002 protein_coding Homo_sapiens 0 464
ENST00000618101 NR4A3-201 protein_coding Homo_sapiens 0.0001 55

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