C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25 (aspartate/glutamate carrier), member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000004864 SLC25A13 9606 - 7:96120220-96322147 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265631 SLC25A13-001 96120220-96322093 protein_coding
  ENST00000416240 SLC25A13-201 96120221-96322147 protein_coding
  ENST00000472162 SLC25A13-005 96193148-96322136 nonsense_mediated_decay
  ENST00000484495 SLC25A13-003 96169868-96189379 processed_transcript
  ENST00000487710 SLC25A13-004 96296898-96309684 processed_transcript
  ENST00000490072 SLC25A13-002 96146554-96185011 processed_transcript
  ENST00000492869 SLC25A13-006 96170044-96184574 processed_transcript
  ENST00000494085 SLC25A13-007 96120956-96121998 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265631ENST00000416240ENST00000472162
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265631 2.923±0.00 4.687±0.00 2.939±0.00 2.458±0.81 2.831±0.00 2.585±1.37 1.528±0.91 15.299±2.71 12.116±10.61 1.829±0.61 0.927±0.00 12.547±10.73 7.892±0.87 4.058±0.76
ENST00000416240 N/A N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A N/A N/A 2.921±0.00 1.977±0.00 N/A
ENST00000472162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.322±0.00 11.479±0.00 5.239±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AS CIL_0008AS_0001 VISTA 7:95767218-96367717
CIL_00053F CIL_00053F_0001 CGP 7:95772506-96322147
CIL_0008Z2 CIL_0008Z2_0001 VISTA 7:95775777-96376384
CIL_0008Z3 CIL_0008Z3_0001 VISTA 7:95796967-96398368
CIL_0007W8 CIL_0007W8_0001 VISTA 7:95945535-96548789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 NAS transporter activity
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005509 IDA:IEA calcium ion binding
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005887 NAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 TAS glucose metabolic process
GO:0006094 TAS gluconeogenesis
GO:0006754 IDA ATP biosynthetic process
GO:0006810 NAS transport
GO:0015183 IDA L-aspartate transmembrane transporter activity
GO:0015810 IDA aspartate transport
GO:0015813 IDA L-glutamate transport
GO:0043490 IDA malate-aspartate shuttle
GO:0044281 TAS small molecule metabolic process
GO:0045333 IDA cellular respiration
GO:0051592 IDA response to calcium ion
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070172 slc25a13 solute carrier family 25, member 13 protein_coding Danio_rerio
ENSMUSG00000015112 Slc25a13 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 protein_coding Mus_musculus

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