C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 25 (aspartate/glutamate carrier), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265631 SLC25A13-001 ENSG00000004864 9606 - 7:96120220-96322093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265631 2.923±0.00 4.687±0.00 2.939±0.00 2.458±0.81 2.831±0.00 2.585±1.37 1.528±0.91 15.299±2.71 12.116±10.61 1.829±0.61 0.927±0.00 12.547±10.73 7.892±0.87 4.058±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AS CIL_0008AS_0001 VISTA 7:95767218-96367717
CIL_00053F CIL_00053F_0001 CGP 7:95772506-96322147
CIL_0008Z2 CIL_0008Z2_0001 VISTA 7:95775777-96376384
CIL_0008Z3 CIL_0008Z3_0001 VISTA 7:95796967-96398368
CIL_0007W8 CIL_0007W8_0001 VISTA 7:95945535-96548789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 NAS transporter activity
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005509 IDA:IEA calcium ion binding
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005887 NAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006006 TAS glucose metabolic process
GO:0006094 TAS gluconeogenesis
GO:0006754 IDA ATP biosynthetic process
GO:0006810 NAS transport
GO:0015183 IDA L-aspartate transmembrane transporter activity
GO:0015810 IDA aspartate transport
GO:0015813 IDA L-glutamate transport
GO:0043490 IDA malate-aspartate shuttle
GO:0044281 TAS small molecule metabolic process
GO:0045333 IDA cellular respiration
GO:0051592 IDA response to calcium ion
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188414 Slc25a13-202 protein_coding Mus_musculus 0 2719
ENSMUST00000015256 Slc25a13-001 protein_coding Mus_musculus 0 2704
ENSMUST00000169197 Slc25a13-002 processed_transcript Mus_musculus 0 1258
ENSMUST00000177805 Slc25a13-008 processed_transcript Mus_musculus 0 701
ENSMUST00000177698 Slc25a13-007 processed_transcript Mus_musculus 0 699
ENSMUST00000179756 Slc25a13-009 processed_transcript Mus_musculus 0 699

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