C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA polymerase II associated protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005175 RPAP3 9606 - 12:47661249-47706061 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000005386 RPAP3-001 47661249-47706061 protein_coding
  ENST00000380650 RPAP3-003 47663293-47705986 protein_coding
  ENST00000432584 RPAP3-002 47663292-47706026 protein_coding
  ENST00000547706 RPAP3-006 47700015-47702816 processed_transcript
  ENST00000548211 RPAP3-007 47663290-47664843 processed_transcript
  ENST00000548296 RPAP3-005 47695942-47697701 retained_intron
  ENST00000551293 RPAP3-004 47701191-47705999 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000005386ENST00000380650ENST00000432584ENST00000547706ENST00000551293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000005386 0.502±0.00 0.610±0.00 0.070±0.00 0.615±0.00 0.929±0.00 0.269±0.00 N/A 1.024±0.50 0.593±0.00 N/A 1.045±0.00 1.217±0.45 1.109±0.23 1.687±0.51
ENST00000380650 1.571±0.00 1.768±0.00 0.530±0.00 0.987±0.35 1.541±0.48 1.881±1.05 1.046±0.77 N/A N/A 1.648±0.34 N/A 3.105±2.62 1.937±1.67 6.666±3.80
ENST00000432584 0.871±0.00 2.952±0.00 N/A 1.701±0.64 0.877±0.39 0.638±0.00 1.202±0.97 2.301±1.17 1.286±0.27 1.053±0.00 2.232±2.04 3.937±1.11 1.821±1.48 4.714±1.40
ENST00000547706 N/A N/A N/A N/A N/A N/A N/A 2.795±0.00 N/A N/A N/A N/A N/A N/A
ENST00000551293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.911±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YR CIL_0005YR_0001 CGP 12:47079603-47706061
CIL_0005YS CIL_0005YS_0001 CGP 12:47661249-47725567

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025882 rpap3 RNA polymerase II associated protein 3 protein_coding Danio_rerio
ENSMUSG00000022466 Rpap3 RNA polymerase II associated protein 3 protein_coding Mus_musculus

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