C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005YR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179715-ENSG00000005175 CGP 9606 12:47079603-47706061
GeneTranscriptPositionBiotype
ENSG00000005175 (RPAP3)
RNA polymerase II associated protein 3 		ENST00000005386 (RPAP3-001) 47661249-47706061 protein_coding
ENST00000380650 (RPAP3-003) 47663293-47705986 protein_coding
ENST00000432584 (RPAP3-002) 47663292-47706026 protein_coding
ENST00000547706 (RPAP3-006) 47700015-47702816 processed_transcript
ENST00000548211 (RPAP3-007) 47663290-47664843 processed_transcript
ENST00000548296 (RPAP3-005) 47695942-47697701 retained_intron
ENST00000551293 (RPAP3-004) 47701191-47705999 retained_intron
ENSG00000139211 (AMIGO2)
adhesion molecule with Ig-like domain 2 		ENST00000266581 (AMIGO2-003) 47075707-47079865 protein_coding
ENST00000429635 (AMIGO2-001) 47076600-47079951 protein_coding
ENST00000550413 (AMIGO2-002) 47076498-47079642 protein_coding
ENSG00000179715 (PCED1B)
PC-esterase domain containing 1B 		ENST00000432328 (PCED1B-201) 47079603-47236662 protein_coding
ENST00000546455 (PCED1B-001) 47079603-47236660 protein_coding
ENST00000548348 (PCED1B-003) 47216587-47235992 protein_coding
ENST00000549500 (PCED1B-004) 47216598-47235565 protein_coding
ENST00000549630 (PCED1B-005) 47223501-47235566 protein_coding
ENST00000551777 (PCED1B-006) 47223545-47235238 protein_coding
ENSG00000199566 (SNORA64)
Small nucleolar RNA SNORA64/SNORA10 family 		ENST00000362696 (SNORA64.1-202) 47346166-47346297 snoRNA
ENSG00000247774 (PCED1B-AS1)
PCED1B antisense RNA 1 		ENST00000500365 (PCED1B-AS1-001) 47208420-47216435 retained_intron
ENST00000547600 (PCED1B-AS1-002) 47205898-47216434 lincRNA
ENST00000547626 (PCED1B-AS1-005) 47205898-47209374 lincRNA
ENST00000547851 (PCED1B-AS1-003) 47206379-47216434 lincRNA
ENST00000548222 (PCED1B-AS1-010) 47205902-47216249 lincRNA
ENST00000550426 (PCED1B-AS1-011) 47205898-47216200 lincRNA
ENST00000551432 (PCED1B-AS1-006) 47205899-47210737 lincRNA
ENST00000551898 (PCED1B-AS1-004) 47205901-47216200 lincRNA
ENST00000552269 (PCED1B-AS1-009) 47205898-47216408 lincRNA
ENST00000552975 (PCED1B-AS1-008) 47205941-47216456 lincRNA
ENST00000552990 (PCED1B-AS1-007) 47205901-47216444 lincRNA
ENSG00000257807 (RP1-90J4.3)
 ENST00000550956 (RP1-90J4.3-001) 47484689-47485722 processed_pseudogene
ENSG00000257905 (RP3-432I18.1)
 ENST00000546846 (RP3-432I18.1-001) 47593208-47593440 processed_pseudogene
ENSG00000257906 (RP1-90J4.1)
 ENST00000552320 (RP1-90J4.1-001) 47415008-47420179 lincRNA
ENSG00000257924 (RP11-493L12.5)
 ENST00000550019 (RP11-493L12.5-001) 47353754-47369935 lincRNA
ENSG00000257925 (RP11-493L12.3)
 ENST00000547748 (RP11-493L12.3-001) 47237734-47279021 antisense
ENSG00000258116 (RP11-493L12.6)
 ENST00000546707 (RP11-493L12.6-001) 47341614-47342089 processed_pseudogene
ENSG00000258181 (RP11-493L12.4)
 ENST00000547777 (RP11-493L12.4-001) 47248124-47249285 lincRNA
ENST00000552063 (RP11-493L12.4-002) 47249136-47257539 lincRNA
ENSG00000258352 (RP11-23J18.1)
 ENST00000548463 (RP11-23J18.1-002) 47135762-47138370 processed_transcript
ENST00000553227 (RP11-23J18.1-001) 47135498-47135901 transcribed_processed_pseudogene
ENSG00000276390 (RP1-197B17.5)
 ENST00000611728 (RP1-197B17.5-001) 47699401-47699917 sense_intronic
ENSG00000276454 (RP11-493L12.7)
 ENST00000615076 (RP11-493L12.7-001) 47265665-47266108 lincRNA
CIL_0005YR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044250-ENSMUSG00000022466 CGP 10090 15:97247107-97705822
GeneTranscriptPositionBiotype
ENSMUSG00000022466 (Rpap3)
RNA polymerase II associated protein 3 		ENSMUST00000023104 (Rpap3-201) 97675105-97705822 protein_coding
ENSMUSG00000044250 (Pced1b)
PC-esterase domain containing 1B 		ENSMUST00000059433 (Pced1b-201) 97247107-97385689 protein_coding
ENSMUSG00000048218 (Amigo2)
adhesion molecule with Ig like domain 2 		ENSMUST00000053106 (Amigo2-201) 97244074-97247287 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YR_0001ENSG00000005175ENST00000005386ENST00000380650ENST00000432584ENST00000547706ENST00000548211ENST00000548296ENST00000551293ENSG00000139211ENST00000266581ENST00000429635ENST00000550413ENSG00000179715ENST00000432328ENST00000546455ENST00000548348ENST00000549500ENST00000549630ENST00000551777ENSG00000199566ENST00000362696ENSG00000247774ENST00000500365ENST00000547600ENST00000547626ENST00000547851ENST00000548222ENST00000550426ENST00000551432ENST00000551898ENST00000552269ENST00000552975ENST00000552990ENSG00000257807ENST00000550956ENSG00000257905ENST00000546846ENSG00000257906ENST00000552320ENSG00000257924ENST00000550019ENSG00000257925ENST00000547748ENSG00000258116ENST00000546707ENSG00000258181ENST00000547777ENST00000552063ENSG00000258352ENST00000548463ENST00000553227ENSG00000276390ENST00000611728ENSG00000276454ENST00000615076CIL_0005YR_0002ENSMUSG00000022466ENSMUST00000023104ENSMUSG00000044250ENSMUST00000059433ENSMUSG00000048218ENSMUST00000053106
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YR_0001ENSG00000005175ENST00000005386ENST00000380650ENST00000432584ENST00000547706ENST00000551293ENSG00000139211ENST00000266581ENST00000429635ENST00000550413ENSG00000179715ENST00000432328ENSG00000199566ENST00000362696ENSG00000247774ENST00000500365ENST00000547626ENST00000551432ENSG00000257807ENST00000550956ENSG00000257905ENST00000546846ENSG00000257906ENST00000552320ENSG00000257924ENST00000550019ENSG00000257925ENST00000547748ENSG00000258116ENST00000546707ENSG00000258181ENST00000547777ENST00000552063ENSG00000258352ENST00000548463ENST00000553227ENSG00000276390ENST00000611728ENSG00000276454ENST00000615076CIL_0005YR_0002ENSMUSG00000022466ENSMUST00000023104ENSMUSG00000044250ENSMUST00000059433ENSMUSG00000048218ENSMUST00000053106
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005175 ENST00000005386 0.502±0.00 0.610±0.00 0.070±0.00 0.615±0.00 0.929±0.00 0.269±0.00 N/A 1.024±0.50 0.593±0.00 N/A 1.045±0.00 1.217±0.45 1.109±0.23 1.687±0.51
ENST00000380650 1.571±0.00 1.768±0.00 0.530±0.00 0.987±0.35 1.541±0.48 1.881±1.05 1.046±0.77 N/A N/A 1.648±0.34 N/A 3.105±2.62 1.937±1.67 6.666±3.80
ENST00000432584 0.871±0.00 2.952±0.00 N/A 1.701±0.64 0.877±0.39 0.638±0.00 1.202±0.97 2.301±1.17 1.286±0.27 1.053±0.00 2.232±2.04 3.937±1.11 1.821±1.48 4.714±1.40
ENST00000547706 N/A N/A N/A N/A N/A N/A N/A 2.795±0.00 N/A N/A N/A N/A N/A N/A
ENST00000548211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.911±0.00 N/A
ENSG00000139211 ENST00000266581 N/A N/A 0.880±0.00 0.566±0.00 N/A 0.538±0.00 N/A N/A N/A N/A N/A 4.540±0.00 N/A N/A
ENST00000429635 2.348±0.00 7.537±0.00 N/A 0.840±0.00 3.895±1.94 3.419±2.24 0.671±0.00 2.957±0.00 1.023±0.61 2.020±1.20 N/A 8.346±0.00 2.855±0.00 3.704±0.00
ENST00000550413 2.287±0.00 N/A N/A 0.835±0.00 1.594±0.00 3.148±0.00 0.388±0.30 0.377±0.00 1.280±0.51 N/A 0.228±0.00 9.392±5.55 4.819±2.47 4.605±0.77
ENSG00000179715 ENST00000432328 3.014±0.00 25.213±0.00 N/A N/A N/A N/A N/A N/A N/A 5.541±4.03 0.327±0.00 N/A 4.548±0.58 5.428±0.05
ENST00000546455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199566 ENST00000362696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.688±0.00
ENSG00000247774 ENST00000500365 N/A N/A 0.373±0.00 N/A N/A N/A 0.142±0.00 0.538±0.00 N/A 0.831±0.00 N/A N/A N/A N/A
ENST00000547600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.591±0.00 N/A
ENST00000547851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.575±0.00 N/A N/A N/A
ENST00000551898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257807 ENST00000550956 N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A
ENSG00000257905 ENST00000546846 0.135±0.00 0.799±0.00 N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00
ENSG00000257906 ENST00000552320 N/A 0.032±0.00 N/A N/A 0.714±0.00 0.029±0.00 0.089±0.00 N/A N/A N/A N/A 0.106±0.03 N/A 4.275±1.07
ENSG00000257924 ENST00000550019 N/A 0.338±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 0.031±0.00 0.073±0.05
ENSG00000257925 ENST00000547748 N/A 0.375±0.00 N/A N/A 0.530±0.44 N/A N/A N/A N/A N/A N/A 0.520±0.00 0.057±0.00 0.079±0.00
ENSG00000258116 ENST00000546707 N/A N/A N/A 0.030±0.00 N/A 0.260±0.00 N/A 0.279±0.00 N/A N/A N/A 0.233±0.03 N/A 0.105±0.00
ENSG00000258181 ENST00000547777 N/A N/A N/A 0.038±0.00 0.122±0.00 N/A N/A N/A N/A 0.087±0.00 N/A 0.108±0.00 0.113±0.00 N/A
ENST00000552063 0.631±0.00 N/A N/A 0.188±0.00 0.578±0.19 0.731±0.00 0.161±0.00 0.060±0.00 N/A 0.382±0.00 N/A 0.406±0.07 0.233±0.18 N/A
ENSG00000258352 ENST00000548463 0.101±0.00 N/A N/A 0.176±0.00 0.436±0.00 N/A N/A N/A N/A 1.523±0.00 N/A 1.383±0.00 0.165±0.02 N/A
ENST00000553227 0.213±0.00 3.923±0.00 N/A N/A 0.646±0.00 0.255±0.14 0.558±0.00 0.058±0.00 0.049±0.00 1.618±0.00 0.047±0.00 1.237±0.82 0.395±0.00 0.278±0.00
ENSG00000276390 ENST00000611728 N/A 0.301±0.00 N/A 0.258±0.00 0.151±0.04 0.322±0.00 0.158±0.00 0.051±0.00 0.077±0.00 0.223±0.00 N/A 0.301±0.17 0.204±0.10 0.309±0.13
ENSG00000276454 ENST00000615076 0.052±0.00 0.313±0.00 N/A N/A 0.099±0.00 0.047±0.00 N/A N/A N/A N/A N/A 0.221±0.00 N/A 0.138±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022466 ENSMUST00000023104 3.078±0.77 1.415±0.62 10.307±0.05 13.175±6.10 1.489±0.43 1.543±0.39 2.375±0.77 3.697±0.27 3.332±2.28 1.762±0.97 4.882±0.24 6.353±6.01 10.159±6.51 4.135±3.33
ENSMUSG00000044250 ENSMUST00000059433 2.451±0.93 5.801±2.43 5.924±0.32 1.404±0.49 8.046±3.54 0.910±0.30 0.637±0.17 1.009±0.37 1.481±0.68 6.023±2.94 0.465±0.18 5.583±2.22 7.156±0.24 1.241±0.63
ENSMUSG00000048218 ENSMUST00000053106 2.284±0.00 N/A 2.093±0.80 1.269±0.42 1.465±0.00 0.324±0.04 0.553±0.13 0.529±0.10 0.621±0.25 3.171±0.05 0.421±0.12 2.485±0.68 1.335±0.47 0.802±0.08

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