C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0005YS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000005175-ENSG00000111405 CGP 9606 12:47661249-47725567
GeneTranscriptPositionBiotype
ENSG00000005175 (RPAP3)
RNA polymerase II associated protein 3
ENST00000005386 (RPAP3-001) 47661249-47706061 protein_coding
ENST00000380650 (RPAP3-003) 47663293-47705986 protein_coding
ENST00000432584 (RPAP3-002) 47663292-47706026 protein_coding
ENST00000547706 (RPAP3-006) 47700015-47702816 processed_transcript
ENST00000548211 (RPAP3-007) 47663290-47664843 processed_transcript
ENST00000548296 (RPAP3-005) 47695942-47697701 retained_intron
ENST00000551293 (RPAP3-004) 47701191-47705999 retained_intron
ENSG00000111405 (ENDOU)
endonuclease, polyU-specific
ENST00000229003 (ENDOU-001) 47709734-47725567 protein_coding
ENST00000422538 (ENDOU-002) 47709745-47725536 protein_coding
ENST00000545824 (ENDOU-003) 47710454-47725534 protein_coding
ENST00000551186 (ENDOU-004) 47716379-47717879 retained_intron
ENSG00000276390 (RP1-197B17.5)
ENST00000611728 (RP1-197B17.5-001) 47699401-47699917 sense_intronic
CIL_0005YS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022466-ENSMUSG00000022468 CGP 10090 15:97675105-97731405
GeneTranscriptPositionBiotype
ENSMUSG00000022466 (Rpap3)
RNA polymerase II associated protein 3
ENSMUST00000023104 (Rpap3-201) 97675105-97705822 protein_coding
ENSMUSG00000022468 (Endou)
endonuclease, polyU-specific
ENSMUST00000023105 (Endou-201) 97711019-97721150 protein_coding
ENSMUST00000100249 (Endou-202) 97711019-97731405 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YS_0001ENSG00000005175ENST00000005386ENST00000380650ENST00000432584ENST00000547706ENST00000548211ENST00000548296ENST00000551293ENSG00000111405ENST00000229003ENST00000422538ENST00000545824ENST00000551186ENSG00000276390ENST00000611728CIL_0005YS_0002ENSMUSG00000022466ENSMUST00000023104ENSMUSG00000022468ENSMUST00000023105ENSMUST00000100249
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YS_0001ENSG00000005175ENST00000005386ENST00000380650ENST00000432584ENST00000547706ENST00000551293ENSG00000111405ENST00000229003ENSG00000276390ENST00000611728CIL_0005YS_0002ENSMUSG00000022466ENSMUST00000023104ENSMUSG00000022468ENSMUST00000023105ENSMUST00000100249
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005175 ENST00000005386 0.502±0.00 0.610±0.00 0.070±0.00 0.615±0.00 0.929±0.00 0.269±0.00 N/A 1.024±0.50 0.593±0.00 N/A 1.045±0.00 1.217±0.45 1.109±0.23 1.687±0.51
ENST00000380650 1.571±0.00 1.768±0.00 0.530±0.00 0.987±0.35 1.541±0.48 1.881±1.05 1.046±0.77 N/A N/A 1.648±0.34 N/A 3.105±2.62 1.937±1.67 6.666±3.80
ENST00000432584 0.871±0.00 2.952±0.00 N/A 1.701±0.64 0.877±0.39 0.638±0.00 1.202±0.97 2.301±1.17 1.286±0.27 1.053±0.00 2.232±2.04 3.937±1.11 1.821±1.48 4.714±1.40
ENST00000547706 N/A N/A N/A N/A N/A N/A N/A 2.795±0.00 N/A N/A N/A N/A N/A N/A
ENST00000548211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.911±0.00 N/A
ENSG00000111405 ENST00000229003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.735±0.00 N/A
ENST00000422538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276390 ENST00000611728 N/A 0.301±0.00 N/A 0.258±0.00 0.151±0.04 0.322±0.00 0.158±0.00 0.051±0.00 0.077±0.00 0.223±0.00 N/A 0.301±0.17 0.204±0.10 0.309±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022466 ENSMUST00000023104 3.078±0.77 1.415±0.62 10.307±0.05 13.175±6.10 1.489±0.43 1.543±0.39 2.375±0.77 3.697±0.27 3.332±2.28 1.762±0.97 4.882±0.24 6.353±6.01 10.159±6.51 4.135±3.33
ENSMUSG00000022468 ENSMUST00000023105 0.222±0.09 0.182±0.08 N/A N/A 0.360±0.15 0.293±0.09 N/A 0.238±0.00 0.109±0.07 N/A N/A 0.321±0.17 N/A 0.052±0.00
ENSMUST00000100249 0.301±0.04 0.336±0.04 N/A 0.301±0.07 0.629±0.19 0.106±0.00 0.409±0.12 0.410±0.15 0.016±0.00 3.668±3.29 0.215±0.11 0.254±0.09 9.321±12.58 0.353±0.08

Loading