C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: putative homeodomain transcription factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000006576 PHTF2 9606 + 7:77798792-77957503 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248550 PHTF2-006 77840180-77957222 protein_coding
  ENST00000275575 PHTF2-002 77798901-77957225 protein_coding
  ENST00000307305 PHTF2-003 77798805-77957225 protein_coding
  ENST00000415251 PHTF2-004 77798888-77923392 protein_coding
  ENST00000416283 PHTF2-201 77798792-77957503 protein_coding
  ENST00000422959 PHTF2-001 77798805-77955945 protein_coding
  ENST00000424760 PHTF2-010 77798813-77940459 protein_coding
  ENST00000450574 PHTF2-005 77840130-77924151 protein_coding
  ENST00000454592 PHTF2-007 77906261-77938013 processed_transcript
  ENST00000468351 PHTF2-011 77920425-77922886 retained_intron
  ENST00000470215 PHTF2-009 77940199-77954894 processed_transcript
  ENST00000479515 PHTF2-008 77908935-77940459 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000275575ENST00000307305ENST00000415251ENST00000416283ENST00000422959ENST00000424760ENST00000450574ENST00000454592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000275575 0.807±0.00 1.052±0.00 N/A 1.838±0.00 N/A 0.785±0.00 N/A 0.648±0.00 0.280±0.00 1.287±0.00 N/A 0.663±0.00 2.405±0.00 3.095±0.00
ENST00000307305 1.379±0.00 1.688±0.00 0.455±0.00 0.904±0.32 2.304±0.89 0.905±0.11 2.581±2.01 2.163±0.00 1.137±0.87 1.423±0.70 5.663±4.01 1.413±0.87 1.483±0.42 2.674±1.93
ENST00000415251 N/A N/A N/A N/A 2.812±0.00 N/A N/A 0.461±0.00 N/A N/A N/A N/A N/A N/A
ENST00000416283 N/A N/A N/A 0.685±0.00 N/A N/A N/A N/A N/A N/A N/A 0.951±0.63 0.219±0.00 0.813±0.00
ENST00000422959 N/A N/A N/A N/A N/A 1.549±0.00 0.590±0.00 N/A N/A N/A 7.569±0.00 1.079±0.00 N/A N/A
ENST00000424760 N/A N/A N/A N/A N/A N/A N/A N/A 2.740±0.00 2.171±0.00 N/A 0.632±0.00 N/A N/A
ENST00000450574 N/A N/A 0.518±0.00 1.048±0.00 N/A 1.341±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454592 N/A N/A 0.802±0.00 N/A N/A N/A 0.646±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000862 CIL_000862_0001 VISTA 7:77397445-77998455

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077204 phtf2 putative homeodomain transcription factor 2 protein_coding Danio_rerio
ENSMUSG00000039987 Phtf2 putative homeodomain transcription factor 2 protein_coding Mus_musculus

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