C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: putative homeodomain transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307305 PHTF2-003 ENSG00000006576 9606 + 7:77798805-77957225 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307305 1.379±0.00 1.688±0.00 0.455±0.00 0.904±0.32 2.304±0.89 0.905±0.11 2.581±2.01 2.163±0.00 1.137±0.87 1.423±0.70 5.663±4.01 1.413±0.87 1.483±0.42 2.674±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000862 CIL_000862_0001 VISTA 7:77397445-77998455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118174 Phtf2-001 protein_coding Mus_musculus 0 2974
ENSMUST00000139325 Phtf2-003 retained_intron Mus_musculus 0 1323
ENSMUST00000140147 Phtf2-002 retained_intron Mus_musculus 0 1146
ENSMUST00000153194 Phtf2-004 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000124431 Phtf2-007 nonsense_mediated_decay Mus_musculus 0 556
ENSMUST00000133784 Phtf2-005 processed_transcript Mus_musculus 0 531
ENSMUST00000156044 Phtf2-006 nonsense_mediated_decay Mus_musculus 0 276

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