C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000862_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm390 VISTA 9606 7:77397445-77998455
GeneTranscriptPositionBiotype
ENSG00000127947 (PTPN12)
protein tyrosine phosphatase, non-receptor type 12 		ENST00000248594 (PTPN12-001) 77537275-77640071 protein_coding
ENST00000407343 (PTPN12-019) 77627156-77638708 protein_coding
ENST00000415482 (PTPN12-002) 77538035-77639280 protein_coding
ENST00000418110 (PTPN12-009) 77545752-77600728 protein_coding
ENST00000433369 (PTPN12-006) 77538029-77592256 protein_coding
ENST00000435495 (PTPN12-003) 77538069-77639620 protein_coding
ENST00000440186 (PTPN12-004) 77571153-77585571 protein_coding
ENST00000447995 (PTPN12-012) 77583555-77610802 nonsense_mediated_decay
ENST00000460731 (PTPN12-010) 77537517-77583821 retained_intron
ENST00000464313 (PTPN12-013) 77606928-77611046 retained_intron
ENST00000481154 (PTPN12-011) 77585149-77592381 retained_intron
ENST00000494248 (PTPN12-014) 77585546-77600965 retained_intron
ENST00000519553 (PTPN12-018) 77636972-77638941 retained_intron
ENST00000520947 (PTPN12-017) 77636765-77639490 retained_intron
ENST00000522115 (PTPN12-016) 77571091-77610828 protein_coding
ENST00000523952 (PTPN12-015) 77537554-77581465 nonsense_mediated_decay
ENSG00000135211 (TMEM60)
transmembrane protein 60 		ENST00000257663 (TMEM60-001) 77793728-77798580 protein_coding
ENSG00000186088 (GSAP)
gamma-secretase activating protein 		ENST00000257626 (GSAP-001) 77310751-77416400 protein_coding
ENST00000334003 (GSAP-002) 77329527-77406105 retained_intron
ENST00000415112 (GSAP-011) 77314374-77330367 protein_coding
ENST00000426477 (GSAP-012) 77321339-77328485 processed_transcript
ENST00000430584 (GSAP-007) 77397001-77415867 protein_coding
ENST00000434084 (GSAP-008) 77351597-77355284 processed_transcript
ENST00000440473 (GSAP-009) 77312166-77331944 processed_transcript
ENST00000441833 (GSAP-201) 77311323-77326246 protein_coding
ENST00000449779 (GSAP-003) 77310751-77355630 retained_intron
ENST00000474686 (GSAP-013) 77311335-77314815 retained_intron
ENST00000482866 (GSAP-005) 77310752-77316314 retained_intron
ENST00000489920 (GSAP-010) 77328615-77330718 retained_intron
ENST00000491796 (GSAP-004) 77310751-77327484 retained_intron
ENSG00000187257 (RSBN1L)
round spermatid basic protein 1-like 		ENST00000334955 (RSBN1L-001) 77696443-77783022 protein_coding
ENST00000441514 (RSBN1L-007) 77768661-77778818 protein_coding
ENST00000445288 (RSBN1L-002) 77697151-77779682 protein_coding
ENST00000445512 (RSBN1L-004) 77759595-77778611 protein_coding
ENST00000462800 (RSBN1L-006) 77768355-77773353 retained_intron
ENST00000468035 (RSBN1L-005) 77765491-77773446 retained_intron
ENST00000614027 (RSBN1L-201) 77696443-77779686 protein_coding
ENSG00000214293 (APTR)
Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding) 		ENST00000398043 (APTR-003) 77684221-77696265 lincRNA
ENST00000416650 (APTR-004) 77683943-77696262 lincRNA
ENST00000430801 (APTR-002) 77659093-77696265 lincRNA
ENST00000440088 (APTR-001) 77657660-77696265 lincRNA
ENST00000447009 (APTR-005) 77684785-77696253 lincRNA
ENSG00000232756 (RP5-1185I7.1)
 ENST00000431722 (RP5-1185I7.1-002) 77990384-77994942 antisense
ENST00000438324 (RP5-1185I7.1-003) 77990420-77995171 antisense
ENST00000454234 (RP5-1185I7.1-001) 77990417-77992623 antisense
ENSG00000237620 (GCNT1P5)
glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 5 		ENST00000449274 (GCNT1P5-001) 77461458-77462139 processed_pseudogene
ENSG00000273341 (RP5-899E9.1)
 ENST00000608884 (RP5-899E9.1-001) 77416673-77425443 lincRNA
CIL_000862_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm390 VISTA 10090 5:20650023-21250986
GeneTranscriptPositionBiotype
ENSMUSG00000028771 (Ptpn12)
protein tyrosine phosphatase, non-receptor type 12 		ENSMUST00000030556 (Ptpn12-001) 20986645-21055911 protein_coding
ENSMUST00000126853 (Ptpn12-004) 20998453-21009606 retained_intron
ENSMUST00000140057 (Ptpn12-003) 21009444-21055725 nonsense_mediated_decay
ENSMUST00000148711 (Ptpn12-005) 20998279-21001411 retained_intron
ENSMUST00000151366 (Ptpn12-006) 20986646-20989261 retained_intron
ENSMUST00000151813 (Ptpn12-002) 21001288-21055753 nonsense_mediated_decay
ENSMUSG00000039934 (Gsap)
gamma-secretase activating protein 		ENSMUST00000036031 (Gsap-201) 21186267-21291701 protein_coding
ENSMUSG00000039968 (Rsbn1l)
round spermatid basic protein 1-like 		ENSMUST00000036489 (Rsbn1l-201) 20893028-20951822 protein_coding
ENSMUSG00000039987 (Phtf2)
putative homeodomain transcription factor 2 		ENSMUST00000118174 (Phtf2-001) 20758663-20882124 protein_coding
ENSMUST00000124431 (Phtf2-007) 20782388-20805707 nonsense_mediated_decay
ENSMUST00000133784 (Phtf2-005) 20782385-20855191 processed_transcript
ENSMUST00000139325 (Phtf2-003) 20788747-20882077 retained_intron
ENSMUST00000140147 (Phtf2-002) 20793302-20882078 retained_intron
ENSMUST00000153194 (Phtf2-004) 20759663-20774113 nonsense_mediated_decay
ENSMUST00000156044 (Phtf2-006) 20805684-20882045 nonsense_mediated_decay
ENSMUSG00000040003 (Magi2)
membrane associated guanylate kinase, WW and PDZ domain containing 2 		ENSMUST00000088516 (Magi2-003) 19227046-20702903 protein_coding
ENSMUST00000101558 (Magi2-001) 19907518-20704798 protein_coding
ENSMUST00000115267 (Magi2-002) 19907861-20702938 protein_coding
ENSMUSG00000045435 (Tmem60)
transmembrane protein 60 		ENSMUST00000115259 (Tmem60-001) 20882191-20886870 protein_coding
ENSMUSG00000082716 (Rpl31-ps5)
ribosomal protein L31, pseudogene 5 		ENSMUST00000118086 (Rpl31-ps5-001) 20806090-20806464 processed_pseudogene
ENSMUSG00000096269 (Rpl31-ps21)
ribosomal protein L31, pseudogene 21 		ENSMUST00000181182 (Rpl31-ps21-001) 21119149-21119522 processed_pseudogene
ENSMUSG00000101013 (RP24-300D7.1)
RIKEN cDNA A630072M18 gene 		ENSMUST00000190567 (RP24-300D7.1-001) 20950989-20956398 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000862_0001ENSG00000127947ENST00000248594ENST00000407343ENST00000415482ENST00000418110ENST00000433369ENST00000435495ENST00000440186ENST00000447995ENST00000460731ENST00000464313ENST00000481154ENST00000494248ENST00000519553ENST00000520947ENST00000522115ENST00000523952ENSG00000135211ENST00000257663ENSG00000186088ENST00000257626ENST00000334003ENST00000415112ENST00000426477ENST00000430584ENST00000434084ENST00000440473ENST00000441833ENST00000449779ENST00000474686ENST00000482866ENST00000489920ENST00000491796ENSG00000187257ENST00000334955ENST00000441514ENST00000445288ENST00000445512ENST00000462800ENST00000468035ENST00000614027ENSG00000214293ENST00000398043ENST00000416650ENST00000430801ENST00000440088ENST00000447009ENSG00000232756ENST00000431722ENST00000438324ENST00000454234ENSG00000237620ENST00000449274ENSG00000273341ENST00000608884CIL_000862_0002ENSMUSG00000028771ENSMUST00000030556ENSMUST00000126853ENSMUST00000140057ENSMUST00000148711ENSMUST00000151366ENSMUST00000151813ENSMUSG00000039934ENSMUST00000036031ENSMUSG00000039968ENSMUST00000036489ENSMUSG00000039987ENSMUST00000118174ENSMUST00000124431ENSMUST00000133784ENSMUST00000139325ENSMUST00000140147ENSMUST00000153194ENSMUST00000156044ENSMUSG00000040003ENSMUST00000088516ENSMUST00000101558ENSMUST00000115267ENSMUSG00000045435ENSMUST00000115259ENSMUSG00000082716ENSMUST00000118086ENSMUSG00000096269ENSMUST00000181182ENSMUSG00000101013ENSMUST00000190567
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127947 ENST00000248594 27.883±0.00 20.405±0.00 N/A 4.514±2.12 11.859±3.77 14.060±8.74 6.157±4.42 9.861±5.72 4.721±0.85 28.013±20.63 5.283±0.00 12.465±7.07 12.095±8.50 13.724±6.33
ENST00000407343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415482 N/A N/A N/A N/A N/A N/A 2.477±1.42 N/A N/A 6.018±0.00 N/A 3.629±0.00 N/A N/A
ENST00000418110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435495 N/A N/A 3.210±0.00 1.729±0.62 3.760±0.00 1.443±0.00 0.710±0.00 N/A N/A 9.748±0.00 1.270±0.00 N/A N/A N/A
ENST00000440186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.914±0.00 N/A N/A
ENST00000522115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135211 ENST00000257663 5.833±0.00 8.229±0.00 1.431±0.00 4.295±0.33 4.083±3.07 3.995±2.18 2.220±1.47 5.730±1.84 4.130±0.23 3.047±1.85 3.933±2.62 7.084±4.26 8.409±3.28 9.781±4.06
ENSG00000186088 ENST00000257626 0.842±0.00 N/A N/A 0.804±0.11 0.878±0.00 1.060±0.00 0.742±0.44 2.219±0.70 0.837±0.00 3.515±0.33 0.202±0.00 2.146±0.44 1.091±0.20 N/A
ENST00000334003 1.068±0.00 3.383±0.00 2.946±0.00 1.368±0.00 2.230±0.00 2.001±0.00 0.734±0.00 N/A 2.347±0.00 6.911±0.00 0.835±0.00 2.987±0.00 N/A N/A
ENST00000415112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.981±0.00 N/A N/A N/A
ENST00000426477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449779 N/A 4.543±0.00 N/A 0.652±0.00 N/A N/A 0.570±0.00 1.719±0.00 N/A N/A 0.136±0.00 3.218±1.17 0.541±0.00 N/A
ENST00000474686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482866 N/A 1.913±0.00 1.396±0.00 N/A 1.844±0.00 N/A 0.501±0.00 N/A 1.873±0.00 N/A N/A 2.037±0.00 N/A N/A
ENST00000489920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491796 N/A N/A N/A 0.774±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187257 ENST00000334955 3.006±0.00 3.960±0.00 N/A 2.832±0.86 2.373±0.31 2.398±0.68 0.953±0.41 2.100±0.53 2.706±1.16 2.858±0.53 1.229±1.14 2.917±0.56 1.356±0.51 4.994±3.08
ENST00000441514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.762±0.00 9.398±0.32 N/A 19.077±0.00
ENST00000445288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445512 N/A N/A N/A N/A N/A N/A N/A 2.774±0.00 12.066±0.00 N/A N/A N/A N/A N/A
ENST00000462800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468035 N/A N/A N/A 7.042±0.00 8.710±0.00 N/A N/A 3.341±0.00 N/A 12.564±0.00 N/A N/A N/A N/A
ENST00000614027 N/A 2.153±0.00 1.359±0.00 0.594±0.00 0.879±0.00 0.951±0.00 N/A 1.275±0.00 N/A 1.213±0.00 0.229±0.00 2.589±0.66 2.633±2.17 7.454±0.00
ENSG00000214293 ENST00000398043 N/A 1.718±0.00 N/A 5.580±0.00 2.445±0.50 4.860±0.00 0.876±0.00 5.531±0.00 1.656±0.00 2.464±0.73 3.777±0.00 3.226±1.80 0.767±0.31 6.971±0.00
ENST00000416650 N/A 1.153±0.00 N/A N/A 1.640±0.00 1.942±0.44 N/A 2.749±2.06 2.181±0.00 N/A N/A 3.352±1.38 1.894±1.43 20.477±17.26
ENST00000430801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.720±0.60 N/A N/A N/A
ENST00000440088 N/A N/A 0.036±0.00 N/A N/A 0.520±0.00 N/A 0.352±0.00 N/A 1.220±0.00 N/A 0.832±0.11 0.118±0.04 0.437±0.00
ENST00000447009 N/A N/A N/A 1.608±0.00 N/A 1.440±0.00 N/A 1.444±0.00 0.311±0.00 N/A N/A N/A N/A N/A
ENSG00000232756 ENST00000431722 N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000438324 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.594±0.00 N/A N/A N/A 0.050±0.00
ENST00000454234 0.021±0.00 0.126±0.00 N/A 0.106±0.00 0.014±0.00 0.045±0.00 0.020±0.00 0.049±0.00 0.049±0.00 0.446±0.40 N/A 0.026±0.01 N/A 0.019±0.00
ENSG00000237620 ENST00000449274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENSG00000273341 ENST00000608884 0.088±0.00 0.325±0.00 N/A 0.200±0.00 0.096±0.00 0.376±0.00 N/A 0.070±0.00 0.081±0.00 0.171±0.02 0.139±0.00 0.254±0.10 0.233±0.07 0.601±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028771 ENSMUST00000030556 2.273±0.45 1.316±0.10 9.114±2.00 8.404±3.45 1.259±0.07 N/A 1.431±0.13 1.536±0.00 5.351±1.65 5.580±0.20 1.935±0.38 6.658±2.40 15.947±7.56 1.108±0.44
ENSMUST00000126853 9.654±0.75 N/A N/A 20.024±3.01 6.640±0.60 7.906±2.38 4.402±0.00 8.149±2.42 7.230±2.70 26.863±3.96 N/A 15.637±9.29 66.478±40.39 5.213±1.14
ENSMUST00000140057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148711 N/A 8.590±1.49 N/A N/A 8.798±0.00 9.843±3.68 N/A 7.555±1.95 6.458±1.41 16.803±0.00 N/A 13.214±2.50 N/A N/A
ENSMUST00000151366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039934 ENSMUST00000036031 1.834±1.26 0.785±0.11 0.952±0.02 2.165±1.96 1.327±0.54 0.665±0.18 0.633±0.18 1.412±0.53 4.342±3.36 15.348±1.36 0.244±0.11 1.820±0.52 0.242±0.05 0.135±0.00
ENSMUSG00000039968 ENSMUST00000036489 2.673±0.97 N/A 5.685±0.19 2.948±0.63 2.133±0.74 1.941±0.11 2.585±0.20 2.015±0.56 2.068±1.41 4.180±0.82 1.385±0.39 2.998±1.44 2.234±0.84 1.603±0.78
ENSMUSG00000039987 ENSMUST00000118174 2.446±0.19 0.360±0.16 3.172±0.17 4.714±1.62 2.462±1.63 0.428±0.16 4.919±1.86 1.269±0.25 1.471±0.93 0.967±0.61 3.504±0.00 1.383±0.86 1.954±0.79 1.374±0.34
ENSMUST00000124431 N/A N/A N/A 6.486±0.00 N/A 1.065±0.00 N/A N/A N/A N/A N/A 10.202±0.00 10.795±3.74 5.416±0.00
ENSMUST00000133784 N/A 0.449±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139325 N/A 0.179±0.02 N/A N/A N/A 0.157±0.00 N/A N/A N/A 0.566±0.00 N/A 0.736±0.07 N/A N/A
ENSMUST00000140147 N/A 0.234±0.08 N/A N/A N/A 0.233±0.00 N/A 0.739±0.17 0.439±0.22 0.433±0.00 N/A 0.370±0.01 N/A 0.456±0.00
ENSMUST00000153194 N/A 0.565±0.12 N/A N/A 1.339±0.06 0.471±0.21 N/A 0.472±0.00 0.457±0.00 0.652±0.08 N/A 0.876±0.20 N/A 0.497±0.00
ENSMUST00000156044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040003 ENSMUST00000088516 N/A N/A N/A N/A 0.154±0.00 0.124±0.00 N/A 0.345±0.00 0.012±0.00 N/A N/A 0.188±0.00 N/A 0.981±0.05
ENSMUST00000101558 0.551±0.02 0.249±0.09 N/A 10.884±3.66 0.599±0.33 0.185±0.07 0.239±0.18 1.164±0.17 0.062±0.04 0.243±0.00 0.118±0.00 0.578±0.33 0.150±0.08 0.390±0.00
ENSMUST00000115267 N/A 0.126±0.00 N/A 7.651±0.00 0.084±0.00 0.167±0.03 N/A N/A 0.012±0.00 N/A 0.058±0.02 0.306±0.14 N/A N/A
ENSMUSG00000045435 ENSMUST00000115259 7.669±0.18 2.288±0.56 13.430±0.26 11.231±7.02 5.112±1.56 3.081±0.66 11.878±1.08 10.705±1.48 9.048±4.43 7.514±1.18 11.286±1.98 3.546±3.61 9.013±5.10 43.930±17.07
ENSMUSG00000082716 ENSMUST00000118086 0.214±0.00 N/A 0.069±0.00 0.237±0.03 0.352±0.10 N/A 0.162±0.00 0.324±0.00 0.044±0.02 0.235±0.00 N/A 0.600±0.11 0.023±0.00 0.352±0.20
ENSMUSG00000096269 ENSMUST00000181182 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101013 ENSMUST00000190567 0.979±0.00 6.523±2.15 2.129±0.35 1.212±0.00 2.296±1.15 1.078±0.29 0.583±0.24 0.631±0.21 1.043±0.37 2.509±1.15 0.470±0.00 2.468±1.74 1.015±0.02 0.397±0.00

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