C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: putative homeodomain transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000275575 PHTF2-002 ENSG00000006576 9606 + 7:77798901-77957225 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000275575
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000275575 0.807±0.00 1.052±0.00 1.838±0.00 0.785±0.00 0.648±0.00 0.280±0.00 1.287±0.00 0.663±0.00 2.405±0.00 3.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000862 CIL_000862_0001 VISTA 7:77397445-77998455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118174 Phtf2-001 protein_coding Mus_musculus 0 2416
ENSMUST00000139325 Phtf2-003 retained_intron Mus_musculus 0 1304
ENSMUST00000140147 Phtf2-002 retained_intron Mus_musculus 0 1127
ENSMUST00000153194 Phtf2-004 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000124431 Phtf2-007 nonsense_mediated_decay Mus_musculus 0 556
ENSMUST00000133784 Phtf2-005 processed_transcript Mus_musculus 0 531
ENSMUST00000156044 Phtf2-006 nonsense_mediated_decay Mus_musculus 0 276

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