C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: putative homeodomain transcription factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039987 Phtf2 10090 - 5:20758663-20882124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000118174 Phtf2-001 20758663-20882124 protein_coding
  ENSMUST00000124431 Phtf2-007 20782388-20805707 nonsense_mediated_decay
  ENSMUST00000133784 Phtf2-005 20782385-20855191 processed_transcript
  ENSMUST00000139325 Phtf2-003 20788747-20882077 retained_intron
  ENSMUST00000140147 Phtf2-002 20793302-20882078 retained_intron
  ENSMUST00000153194 Phtf2-004 20759663-20774113 nonsense_mediated_decay
  ENSMUST00000156044 Phtf2-006 20805684-20882045 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118174ENSMUST00000124431ENSMUST00000133784ENSMUST00000139325ENSMUST00000140147ENSMUST00000153194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118174 2.446±0.19 0.360±0.16 3.172±0.17 4.714±1.62 2.462±1.63 0.428±0.16 4.919±1.86 1.269±0.25 1.471±0.93 0.967±0.61 3.504±0.00 1.383±0.86 1.954±0.79 1.374±0.34
ENSMUST00000124431 N/A N/A N/A 6.486±0.00 N/A 1.065±0.00 N/A N/A N/A N/A N/A 10.202±0.00 10.795±3.74 5.416±0.00
ENSMUST00000133784 N/A 0.449±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139325 N/A 0.179±0.02 N/A N/A N/A 0.157±0.00 N/A N/A N/A 0.566±0.00 N/A 0.736±0.07 N/A N/A
ENSMUST00000140147 N/A 0.234±0.08 N/A N/A N/A 0.233±0.00 N/A 0.739±0.17 0.439±0.22 0.433±0.00 N/A 0.370±0.01 N/A 0.456±0.00
ENSMUST00000153194 N/A 0.565±0.12 N/A N/A 1.339±0.06 0.471±0.21 N/A 0.472±0.00 0.457±0.00 0.652±0.08 N/A 0.876±0.20 N/A 0.497±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S6 CIL_0008S6_0002 VISTA 5:20193774-20794889
CIL_000862 CIL_000862_0002 VISTA 5:20650023-21250986

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077204 phtf2 putative homeodomain transcription factor 2 protein_coding Danio_rerio
ENSG00000006576 PHTF2 putative homeodomain transcription factor 2 protein_coding Homo_sapiens

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