C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000008988 RPS20 9606 - 8:56067295-56074581 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000009589 RPS20-002 56072947-56074506 protein_coding
  ENST00000518875 RPS20-008 56073316-56074498 protein_coding
  ENST00000519369 RPS20-005 56073462-56074506 retained_intron
  ENST00000519606 RPS20-007 56073075-56074506 protein_coding
  ENST00000519807 RPS20-001 56067295-56074509 protein_coding
  ENST00000520490 RPS20-006 56073054-56074472 processed_transcript
  ENST00000520627 RPS20-011 56073054-56074510 protein_coding
  ENST00000521262 RPS20-003 56073054-56074510 protein_coding
  ENST00000521289 RPS20-010 56073127-56074506 retained_intron
  ENST00000523936 RPS20-009 56073073-56074356 protein_coding
  ENST00000524349 RPS20-004 56073042-56074506 protein_coding
  ENST00000618656 RPS20-201 56069738-56074581 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000009589ENST00000519807ENST00000520627ENST00000521262ENST00000521289ENST00000618656
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000009589 N/A 177.906±0.00 51.538±0.00 74.382±0.00 166.574±0.00 161.110±0.00 63.994±0.00 84.909±16.54 103.265±83.55 153.897±0.00 97.014±60.54 1040.866±635.42 561.850±378.20 N/A
ENST00000519807 N/A N/A N/A 11.039±5.55 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520627 N/A N/A 15.816±0.00 21.451±0.00 67.321±0.00 67.153±0.00 26.515±0.00 77.377±0.00 106.165±0.00 60.191±0.00 52.411±0.00 383.555±335.41 N/A N/A
ENST00000521262 1239.110±0.00 1325.010±0.00 N/A 344.065±0.00 1582.030±0.00 1515.230±0.00 127.771±0.00 408.111±0.00 150.525±0.00 678.907±0.00 196.563±0.00 38.277±0.00 N/A 710.862±680.22
ENST00000521289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.413±0.00
ENST00000618656 N/A N/A N/A N/A N/A N/A 78.683±0.00 N/A 41.752±0.00 292.139±0.00 94.921±0.00 67.509±0.00 102.687±0.00 60.465±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U6 CIL_0001U6_0001 CGP 8:55879813-56074581
CIL_0002RN CIL_0002RN_0001 CGP 8:56067295-56113982

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000028234 Rps20 ribosomal protein S20 protein_coding Mus_musculus

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