C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520627 RPS20-011 ENSG00000008988 9606 - 8:56073054-56074510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000520627
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000520627 15.816±0.00 21.451±0.00 67.321±0.00 67.153±0.00 26.515±0.00 77.377±0.00 106.165±0.00 60.191±0.00 52.411±0.00 383.555±335.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U6 CIL_0001U6_0001 CGP 8:55879813-56074581
CIL_0002RN CIL_0002RN_0001 CGP 8:56067295-56113982

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130128 Rps20-003 retained_intron Mus_musculus 0 363
ENSMUST00000103009 Rps20-002 retained_intron Mus_musculus 0 363
ENSMUST00000138502 Rps20-001 protein_coding Mus_musculus 0 363
ENSMUST00000154056 Gm4997-001 processed_pseudogene Mus_musculus 0 300

Loading