C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001U6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000254087-ENSG00000008988 CGP 9606 8:55879813-56074581
GeneTranscriptPositionBiotype
ENSG00000008988 (RPS20)
ribosomal protein S20 		ENST00000009589 (RPS20-002) 56072947-56074506 protein_coding
ENST00000518875 (RPS20-008) 56073316-56074498 protein_coding
ENST00000519369 (RPS20-005) 56073462-56074506 retained_intron
ENST00000519606 (RPS20-007) 56073075-56074506 protein_coding
ENST00000519807 (RPS20-001) 56067295-56074509 protein_coding
ENST00000520490 (RPS20-006) 56073054-56074472 processed_transcript
ENST00000520627 (RPS20-011) 56073054-56074510 protein_coding
ENST00000521262 (RPS20-003) 56073054-56074510 protein_coding
ENST00000521289 (RPS20-010) 56073127-56074506 retained_intron
ENST00000523936 (RPS20-009) 56073073-56074356 protein_coding
ENST00000524349 (RPS20-004) 56073042-56074506 protein_coding
ENST00000618656 (RPS20-201) 56069738-56074581 protein_coding
ENSG00000199405 (SNORA1)
Small nucleolar RNA SNORA1 		ENST00000362535 (SNORA1.1-201) 55902723-55902855 snoRNA
ENSG00000216204 (AC018607.1)
 ENST00000401385 (AC018607.1-201) 55908961-55909052 miRNA
ENSG00000236814 (RP11-446E9.1)
 ENST00000435260 (RP11-446E9.1-001) 56050038-56051207 processed_pseudogene
ENSG00000240905 (RN7SL798P)
RNA, 7SL, cytoplasmic 798, pseudogene 		ENST00000468562 (RN7SL798P-201) 55980240-55980540 misc_RNA
ENSG00000241997 (RN7SL323P)
RNA, 7SL, cytoplasmic 323, pseudogene 		ENST00000494712 (RN7SL323P-201) 56022019-56022313 misc_RNA
ENSG00000254325 (RP11-318K15.2)
 ENST00000518552 (RP11-318K15.2-001) 55893595-55895739 sense_intronic
ENSG00000271722 (RP11-446E9.2)
 ENST00000607326 (RP11-446E9.2-001) 56013487-56014168 lincRNA
CIL_0001U6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042228-ENSMUSG00000028234 CGP 10090 4:3678115-3835665
GeneTranscriptPositionBiotype
ENSMUSG00000028234 (Rps20)
ribosomal protein S20 		ENSMUST00000103009 (Rps20-002) 3834473-3835488 retained_intron
ENSMUST00000130128 (Rps20-003) 3834470-3835233 retained_intron
ENSMUST00000138502 (Rps20-001) 3831334-3835665 protein_coding
ENSMUSG00000042228 (Lyn)
Yamaguchi sarcoma viral (v-yes-1) oncogene homolog 		ENSMUST00000041377 (Lyn-001) 3678115-3791613 protein_coding
ENSMUST00000103010 (Lyn-002) 3678127-3791612 protein_coding
ENSMUST00000137943 (Lyn-004) 3756457-3813122 processed_transcript
ENSMUST00000145083 (Lyn-003) 3678130-3739176 processed_transcript
ENSMUSG00000055216 (9430025C20Rik)
RIKEN cDNA 9430025C20 gene 		ENSMUST00000068663 (9430025C20Rik-201) 3806635-3808751 pseudogene
ENSMUSG00000077271 (Gm22781)
predicted gene, 22781 		ENSMUST00000104083 (Gm22781-201) 3796447-3796583 snoRNA
ENSMUSG00000083186 (Gm11805)
predicted gene 11805 		ENSMUST00000121238 (Gm11805-001) 3720427-3721026 processed_pseudogene
ENSMUSG00000097860 (Gm26857)
predicted gene, 26857 		ENSMUST00000181580 (Gm26857-201) 3678117-3689548 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U6_0001ENSG00000008988ENST00000009589ENST00000518875ENST00000519369ENST00000519606ENST00000519807ENST00000520490ENST00000520627ENST00000521262ENST00000521289ENST00000523936ENST00000524349ENST00000618656ENSG00000199405ENST00000362535ENSG00000216204ENST00000401385ENSG00000236814ENST00000435260ENSG00000240905ENST00000468562ENSG00000241997ENST00000494712ENSG00000254325ENST00000518552ENSG00000271722ENST00000607326CIL_0001U6_0002ENSMUSG00000028234ENSMUST00000103009ENSMUST00000130128ENSMUST00000138502ENSMUSG00000042228ENSMUST00000041377ENSMUST00000103010ENSMUST00000137943ENSMUST00000145083ENSMUSG00000055216ENSMUST00000068663ENSMUSG00000077271ENSMUST00000104083ENSMUSG00000083186ENSMUST00000121238ENSMUSG00000097860ENSMUST00000181580
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U6_0001ENSG00000008988ENST00000009589ENST00000519807ENST00000520627ENST00000521262ENST00000521289ENST00000618656ENSG00000199405ENST00000362535ENSG00000216204ENST00000401385ENSG00000236814ENST00000435260ENSG00000240905ENST00000468562ENSG00000241997ENST00000494712ENSG00000254325ENST00000518552ENSG00000271722ENST00000607326CIL_0001U6_0002ENSMUSG00000028234ENSMUST00000103009ENSMUST00000138502ENSMUSG00000042228ENSMUST00000041377ENSMUST00000103010ENSMUST00000137943ENSMUSG00000055216ENSMUST00000068663ENSMUSG00000077271ENSMUST00000104083ENSMUSG00000083186ENSMUST00000121238ENSMUSG00000097860ENSMUST00000181580
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008988 ENST00000009589 N/A 177.906±0.00 51.538±0.00 74.382±0.00 166.574±0.00 161.110±0.00 63.994±0.00 84.909±16.54 103.265±83.55 153.897±0.00 97.014±60.54 1040.866±635.42 561.850±378.20 N/A
ENST00000518875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519807 N/A N/A N/A 11.039±5.55 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520627 N/A N/A 15.816±0.00 21.451±0.00 67.321±0.00 67.153±0.00 26.515±0.00 77.377±0.00 106.165±0.00 60.191±0.00 52.411±0.00 383.555±335.41 N/A N/A
ENST00000521262 1239.110±0.00 1325.010±0.00 N/A 344.065±0.00 1582.030±0.00 1515.230±0.00 127.771±0.00 408.111±0.00 150.525±0.00 678.907±0.00 196.563±0.00 38.277±0.00 N/A 710.862±680.22
ENST00000521289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.413±0.00
ENST00000523936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618656 N/A N/A N/A N/A N/A N/A 78.683±0.00 N/A 41.752±0.00 292.139±0.00 94.921±0.00 67.509±0.00 102.687±0.00 60.465±0.00
ENSG00000199405 ENST00000362535 N/A 0.333±0.00 N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000216204 ENST00000401385 0.186±0.00 N/A N/A N/A N/A 0.147±0.00 N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A
ENSG00000236814 ENST00000435260 N/A 0.028±0.00 0.040±0.00 0.107±0.01 0.018±0.00 0.117±0.00 N/A 0.101±0.00 0.108±0.00 N/A N/A 0.054±0.03 N/A 0.125±0.11
ENSG00000240905 ENST00000468562 N/A N/A N/A 0.243±0.00 0.076±0.00 0.068±0.00 N/A 0.148±0.00 N/A 0.214±0.00 N/A N/A N/A 0.133±0.00
ENSG00000241997 ENST00000494712 N/A 0.735±0.00 N/A 0.056±0.00 0.053±0.00 N/A N/A N/A N/A N/A N/A 0.420±0.00 N/A 0.048±0.00
ENSG00000254325 ENST00000518552 N/A 0.199±0.00 N/A 0.034±0.00 0.094±0.00 0.498±0.00 0.474±0.00 0.476±0.46 0.217±0.00 0.618±0.00 N/A 0.077±0.02 0.062±0.00 N/A
ENSG00000271722 ENST00000607326 0.215±0.00 0.767±0.00 N/A 0.090±0.00 0.161±0.06 0.079±0.00 0.118±0.00 0.168±0.00 0.310±0.00 0.250±0.00 0.091±0.00 0.235±0.07 0.437±0.14 0.147±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028234 ENSMUST00000103009 88.950±0.00 N/A 491.425±76.22 136.288±44.77 141.480±51.28 N/A 58.665±23.43 51.906±8.28 351.970±114.07 N/A 305.725±35.29 910.710±322.04 461.415±133.72 148.412±18.43
ENSMUST00000130128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138502 96.378±64.30 196.856±44.89 45.848±0.00 23.872±23.10 95.476±97.39 128.486±40.38 10.358±2.75 33.168±25.10 47.380±50.12 96.733±8.93 7.453±2.90 165.480±96.50 37.668±49.93 65.863±40.50
ENSMUSG00000042228 ENSMUST00000041377 3.595±0.36 N/A 3.102±0.77 0.925±0.67 4.964±2.77 3.558±0.00 1.647±0.55 1.819±0.48 4.544±2.89 7.989±0.58 0.880±0.27 3.676±1.28 3.837±1.69 0.244±0.01
ENSMUST00000103010 4.868±0.65 5.322±0.82 1.805±0.12 0.546±0.27 6.977±2.37 4.896±0.54 2.107±0.29 3.417±0.67 3.312±1.15 13.060±2.19 0.434±0.24 3.266±1.32 1.893±0.47 0.170±0.10
ENSMUST00000137943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.984±0.19 N/A N/A
ENSMUST00000145083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055216 ENSMUST00000068663 0.206±0.08 0.181±0.10 0.206±0.04 0.462±0.26 0.127±0.02 0.113±0.06 0.078±0.03 0.051±0.02 0.077±0.04 0.235±0.07 0.047±0.01 0.275±0.11 0.124±0.06 0.062±0.05
ENSMUSG00000077271 ENSMUST00000104083 792.615±84.68 N/A N/A 4.905±0.00 N/A 1836.000±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083186 ENSMUST00000121238 0.194±0.07 0.357±0.00 0.048±0.00 0.176±0.00 0.674±0.35 0.406±0.13 N/A N/A 0.301±0.16 0.371±0.13 0.059±0.00 0.075±0.00 0.077±0.00 0.096±0.00
ENSMUSG00000097860 ENSMUST00000181580 3.193±0.79 16.651±1.97 N/A 0.288±0.00 17.914±10.95 9.598±0.92 1.490±0.65 2.779±1.01 2.858±0.35 22.665±8.50 N/A 7.897±3.23 N/A 0.110±0.09

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