C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000009589 RPS20-002 ENSG00000008988 9606 - 8:56072947-56074506 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000009589
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000009589 177.906±0.00 51.538±0.00 74.382±0.00 166.574±0.00 161.110±0.00 63.994±0.00 84.909±16.54 103.265±83.55 153.897±0.00 97.014±60.54 1040.866±635.42 561.850±378.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U6 CIL_0001U6_0001 CGP 8:55879813-56074581
CIL_0002RN CIL_0002RN_0001 CGP 8:56067295-56113982

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138502 Rps20-001 protein_coding Mus_musculus 0 549
ENSMUST00000103009 Rps20-002 retained_intron Mus_musculus 0 464
ENSMUST00000130128 Rps20-003 retained_intron Mus_musculus 0 363
ENSMUST00000154056 Gm4997-001 processed_pseudogene Mus_musculus 0 355

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