C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002RN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000008988-ENSG00000172680 CGP 9606 8:56067295-56113982
GeneTranscriptPositionBiotype
ENSG00000008988 (RPS20)
ribosomal protein S20 		ENST00000009589 (RPS20-002) 56072947-56074506 protein_coding
ENST00000518875 (RPS20-008) 56073316-56074498 protein_coding
ENST00000519369 (RPS20-005) 56073462-56074506 retained_intron
ENST00000519606 (RPS20-007) 56073075-56074506 protein_coding
ENST00000519807 (RPS20-001) 56067295-56074509 protein_coding
ENST00000520490 (RPS20-006) 56073054-56074472 processed_transcript
ENST00000520627 (RPS20-011) 56073054-56074510 protein_coding
ENST00000521262 (RPS20-003) 56073054-56074510 protein_coding
ENST00000521289 (RPS20-010) 56073127-56074506 retained_intron
ENST00000523936 (RPS20-009) 56073073-56074356 protein_coding
ENST00000524349 (RPS20-004) 56073042-56074506 protein_coding
ENST00000618656 (RPS20-201) 56069738-56074581 protein_coding
ENSG00000172680 (MOS)
v-mos Moloney murine sarcoma viral oncogene homolog 		ENST00000311923 (MOS-001) 56112942-56113982 protein_coding
ENSG00000248578 (NPM1P21)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 21 		ENST00000513394 (NPM1P21-001) 56101199-56102267 processed_pseudogene
ENSG00000253603 (CTA-397H3.3)
 ENST00000521403 (CTA-397H3.3-001) 56074592-56075274 antisense
CIL_0002RN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028234-ENSMUSG00000078365 CGP 10090 4:3831334-3872105
GeneTranscriptPositionBiotype
ENSMUSG00000028234 (Rps20)
ribosomal protein S20 		ENSMUST00000103009 (Rps20-002) 3834473-3835488 retained_intron
ENSMUST00000130128 (Rps20-003) 3834470-3835233 retained_intron
ENSMUST00000138502 (Rps20-001) 3831334-3835665 protein_coding
ENSMUSG00000078365 (Mos)
Moloney sarcoma oncogene 		ENSMUST00000105158 (Mos-001) 3870657-3872105 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RN_0001ENSG00000008988ENST00000009589ENST00000518875ENST00000519369ENST00000519606ENST00000519807ENST00000520490ENST00000520627ENST00000521262ENST00000521289ENST00000523936ENST00000524349ENST00000618656ENSG00000172680ENST00000311923ENSG00000248578ENST00000513394ENSG00000253603ENST00000521403CIL_0002RN_0002ENSMUSG00000028234ENSMUST00000103009ENSMUST00000130128ENSMUST00000138502ENSMUSG00000078365ENSMUST00000105158
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RN_0001ENSG00000008988ENST00000009589ENST00000519807ENST00000520627ENST00000521262ENST00000521289ENST00000618656ENSG00000172680ENST00000311923ENSG00000248578ENST00000513394ENSG00000253603ENST00000521403CIL_0002RN_0002ENSMUSG00000028234ENSMUST00000103009ENSMUST00000138502ENSMUSG00000078365ENSMUST00000105158
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000008988 ENST00000009589 N/A 177.906±0.00 51.538±0.00 74.382±0.00 166.574±0.00 161.110±0.00 63.994±0.00 84.909±16.54 103.265±83.55 153.897±0.00 97.014±60.54 1040.866±635.42 561.850±378.20 N/A
ENST00000518875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519807 N/A N/A N/A 11.039±5.55 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520627 N/A N/A 15.816±0.00 21.451±0.00 67.321±0.00 67.153±0.00 26.515±0.00 77.377±0.00 106.165±0.00 60.191±0.00 52.411±0.00 383.555±335.41 N/A N/A
ENST00000521262 1239.110±0.00 1325.010±0.00 N/A 344.065±0.00 1582.030±0.00 1515.230±0.00 127.771±0.00 408.111±0.00 150.525±0.00 678.907±0.00 196.563±0.00 38.277±0.00 N/A 710.862±680.22
ENST00000521289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.413±0.00
ENST00000523936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618656 N/A N/A N/A N/A N/A N/A 78.683±0.00 N/A 41.752±0.00 292.139±0.00 94.921±0.00 67.509±0.00 102.687±0.00 60.465±0.00
ENSG00000172680 ENST00000311923 N/A N/A N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.579±0.08
ENSG00000248578 ENST00000513394 0.084±0.00 0.088±0.00 N/A 0.014±0.00 0.014±0.00 0.053±0.00 0.033±0.01 0.014±0.00 N/A N/A N/A 0.060±0.05 N/A 0.201±0.11
ENSG00000253603 ENST00000521403 N/A 0.112±0.00 N/A 0.433±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.358±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028234 ENSMUST00000103009 88.950±0.00 N/A 491.425±76.22 136.288±44.77 141.480±51.28 N/A 58.665±23.43 51.906±8.28 351.970±114.07 N/A 305.725±35.29 910.710±322.04 461.415±133.72 148.412±18.43
ENSMUST00000130128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138502 96.378±64.30 196.856±44.89 45.848±0.00 23.872±23.10 95.476±97.39 128.486±40.38 10.358±2.75 33.168±25.10 47.380±50.12 96.733±8.93 7.453±2.90 165.480±96.50 37.668±49.93 65.863±40.50
ENSMUSG00000078365 ENSMUST00000105158 0.168±0.11 0.072±0.05 0.097±0.04 0.140±0.05 0.146±0.09 N/A 0.055±0.01 0.041±0.02 0.032±0.01 0.058±0.03 0.038±0.01 6.280±2.18 0.062±0.02 0.610±0.28

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