C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TRAF3 interacting protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000009790 TRAF3IP3 9606 + 1:209756032-209782320 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367023 TRAF3IP3-006 209768488-209779656 protein_coding
  ENST00000367024 TRAF3IP3-002 209758498-209782307 protein_coding
  ENST00000367025 TRAF3IP3-001 209756049-209782315 protein_coding
  ENST00000367026 TRAF3IP3-012 209756179-209782320 protein_coding
  ENST00000400959 TRAF3IP3-011 209756032-209779655 protein_coding
  ENST00000460314 TRAF3IP3-004 209778367-209782307 retained_intron
  ENST00000467830 TRAF3IP3-005 209780839-209782183 processed_transcript
  ENST00000468672 TRAF3IP3-014 209756136-209762596 processed_transcript
  ENST00000471368 TRAF3IP3-008 209777439-209782320 nonsense_mediated_decay
  ENST00000474496 TRAF3IP3-016 209768605-209777421 retained_intron
  ENST00000476050 TRAF3IP3-003 209768595-209779653 retained_intron
  ENST00000477431 TRAF3IP3-017 209768615-209782313 protein_coding
  ENST00000478359 TRAF3IP3-013 209756066-209779655 nonsense_mediated_decay
  ENST00000479796 TRAF3IP3-007 209756136-209760117 protein_coding
  ENST00000487271 TRAF3IP3-015 209768605-209777384 protein_coding
  ENST00000488702 TRAF3IP3-010 209775808-209779364 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367023ENST00000367025ENST00000367026ENST00000400959ENST00000460314ENST00000471368ENST00000476050ENST00000477431ENST00000478359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367023 N/A N/A N/A N/A N/A N/A N/A N/A 0.521±0.00 N/A N/A N/A N/A N/A
ENST00000367025 N/A 5.229±0.00 N/A N/A 0.308±0.00 N/A N/A N/A N/A N/A N/A 0.939±0.00 0.296±0.00 N/A
ENST00000367026 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.039±0.00 N/A 0.706±0.00 0.453±0.18 0.590±0.00
ENST00000400959 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.719±0.00 N/A 0.581±0.00 N/A N/A
ENST00000460314 N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 N/A 0.726±0.31 0.056±0.00 N/A N/A N/A
ENST00000471368 N/A N/A N/A N/A N/A N/A N/A 0.963±0.00 N/A N/A N/A N/A N/A N/A
ENST00000476050 N/A N/A 0.079±0.00 0.170±0.00 0.381±0.00 0.876±0.00 0.062±0.00 N/A N/A 0.481±0.00 N/A N/A 0.161±0.00 N/A
ENST00000477431 0.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478359 N/A N/A 0.122±0.00 N/A 0.521±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089N CIL_00089N_0001 VISTA 1:209189712-209790617
CIL_0007ZL CIL_0007ZL_0001 VISTA 1:209515705-210116479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016021 IEA integral component of membrane
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086708 CR847543.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000037318 Traf3ip3 TRAF3 interacting protein 3 protein_coding Mus_musculus

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