C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium binding and coiled-coil domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000012822 CALCOCO1 9606 - 12:53708517-53727745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262059 CALCOCO1-004 53708517-53727745 protein_coding
  ENST00000430117 CALCOCO1-006 53711119-53727439 protein_coding
  ENST00000546443 CALCOCO1-011 53711119-53714629 protein_coding
  ENST00000546619 CALCOCO1-027 53722155-53727452 protein_coding
  ENST00000546774 CALCOCO1-018 53724583-53727452 retained_intron
  ENST00000547885 CALCOCO1-019 53724044-53727467 processed_transcript
  ENST00000547949 CALCOCO1-021 53722164-53725267 processed_transcript
  ENST00000547988 CALCOCO1-005 53719772-53727452 retained_intron
  ENST00000548177 CALCOCO1-016 53723640-53727452 protein_coding
  ENST00000548263 CALCOCO1-003 53711159-53727428 protein_coding
  ENST00000548431 CALCOCO1-020 53724404-53727491 retained_intron
  ENST00000549173 CALCOCO1-030 53723621-53727451 protein_coding
  ENST00000549349 CALCOCO1-015 53723696-53727457 protein_coding
  ENST00000549613 CALCOCO1-013 53714137-53716349 retained_intron
  ENST00000549688 CALCOCO1-024 53723729-53726340 protein_coding
  ENST00000549784 CALCOCO1-017 53723594-53727606 protein_coding
  ENST00000549935 CALCOCO1-007 53713170-53727452 retained_intron
  ENST00000550804 CALCOCO1-001 53711790-53727440 protein_coding
  ENST00000551900 CALCOCO1-028 53722140-53727452 protein_coding
  ENST00000552282 CALCOCO1-022 53715675-53719778 retained_intron
  ENST00000552623 CALCOCO1-025 53723683-53726340 protein_coding
  ENST00000553154 CALCOCO1-026 53723550-53727452 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000430117ENST00000546443ENST00000548263ENST00000549935ENST00000550804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000430117 19.493±0.00 7.870±0.00 N/A 9.439±0.00 16.141±0.00 17.254±0.00 6.872±5.38 5.651±0.00 1.855±0.00 18.884±0.00 12.426±10.06 10.142±6.40 10.130±2.17 7.483±0.27
ENST00000546443 N/A 12.083±0.00 N/A 10.707±1.33 16.087±0.00 21.340±0.00 20.655±0.00 5.542±3.50 3.898±0.00 12.234±0.00 15.298±8.26 22.774±0.00 20.841±0.63 5.853±0.00
ENST00000548263 5.753±0.00 4.240±0.00 3.139±0.00 4.257±2.44 5.097±2.47 1.476±0.00 2.493±1.24 3.465±1.68 3.004±1.61 7.429±2.63 N/A 5.610±4.31 3.493±0.00 2.999±0.67
ENST00000549935 N/A N/A N/A N/A 3.398±0.00 3.776±0.00 N/A 0.930±0.00 N/A N/A N/A 5.480±3.28 N/A 4.082±0.00
ENST00000550804 20.427±0.00 11.536±0.00 4.606±0.00 11.660±3.12 12.967±6.37 14.616±10.43 11.238±5.57 6.063±4.23 11.453±0.00 10.698±0.04 15.823±7.20 8.659±6.78 15.777±0.77 7.128±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_00003I CIL_00003I_0001 CGP 12:53632726-53727745
CIL_00033H CIL_00033H_0003 CGP 12:53708517-53946544

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0003682 IEA chromatin binding
GO:0003712 IDA transcription cofactor activity
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 ISS transcription, DNA-templated
GO:0007165 ISS signal transduction
GO:0008013 IPI beta-catenin binding
GO:0008022 IPI protein C-terminus binding
GO:0016055 IEA Wnt signaling pathway
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 ISS intracellular steroid hormone receptor signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016391 calcoco1b calcium binding and coiled-coil domain 1b protein_coding Danio_rerio
ENSDARG00000036695 calcoco1a calcium binding and coiled-coil domain 1a protein_coding Danio_rerio
ENSMUSG00000023055 Calcoco1 calcium binding and coiled coil domain 1 protein_coding Mus_musculus

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