C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00033H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016391-ENSDARG00000090023 CGP 7955 11:2064037-2111963
GeneTranscriptPositionBiotype
ENSDARG00000016391 (calcoco1b)
calcium binding and coiled-coil domain 1b 		ENSDART00000008409 (calcoco1b-201) 2064037-2083734 protein_coding
CIL_00033H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036695-ENSDARG00000070353 CGP 7955 23:36033383-36107430
GeneTranscriptPositionBiotype
ENSDARG00000036695 (calcoco1a)
calcium binding and coiled-coil domain 1a 		ENSDART00000103150 (calcoco1a-001) 36033383-36054826 protein_coding
ENSDART00000129574 (calcoco1a-002) 36050091-36050876 processed_transcript
ENSDARG00000070353 (hoxc13a)
homeo box C13a 		ENSDART00000103149 (hoxc13a-001) 36104488-36107430 protein_coding
CIL_00033H_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000012822-ENSG00000123364 CGP 9606 12:53708517-53946544
GeneTranscriptPositionBiotype
ENSG00000123364 (HOXC13)
homeobox C13 		ENST00000243056 (HOXC13-001) 53938765-53946544 protein_coding
ENSG00000249641 (HOXC13-AS)
HOXC13 antisense RNA 		ENST00000512916 (HOXC13-AS-001) 53935328-53939643 antisense
ENSG00000260030 (RP11-686F15.2)
 ENST00000566418 (RP11-686F15.2-001) 53754358-53762104 lincRNA
ENSG00000260492 (CISTR)
chondrogenesis-associated transcript 		ENST00000570015 (CISTR-001) 53750447-53751835 lincRNA
CIL_00033H_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023055-ENSMUSG00000001655 CGP 10090 15:102706779-102928814
GeneTranscriptPositionBiotype
ENSMUSG00000001655 (Hoxc13)
homeobox C13 		ENSMUST00000001700 (Hoxc13-001) 102921103-102928814 protein_coding
ENSMUSG00000023055 (Calcoco1)
calcium binding and coiled coil domain 1 		ENSMUST00000023818 (Calcoco1-001) 102706779-102722178 protein_coding
ENSMUST00000166943 (Calcoco1-004) 102710225-102715796 retained_intron
ENSMUST00000168112 (Calcoco1-003) 102706972-102709902 protein_coding
ENSMUST00000171838 (Calcoco1-002) 102707585-102722131 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00033H_0001ENSDARG00000016391ENSDART00000008409CIL_00033H_0002ENSDARG00000036695ENSDART00000103150ENSDART00000129574ENSDARG00000070353ENSDART00000103149CIL_00033H_0003ENSG00000123364ENST00000243056ENSG00000249641ENST00000512916ENSG00000260030ENST00000566418ENSG00000260492ENST00000570015CIL_00033H_0004ENSMUSG00000001655ENSMUST00000001700ENSMUSG00000023055ENSMUST00000023818ENSMUST00000166943ENSMUST00000168112ENSMUST00000171838
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00033H_0001ENSDARG00000016391ENSDART00000008409CIL_00033H_0002ENSDARG00000036695ENSDART00000103150ENSDARG00000070353ENSDART00000103149CIL_00033H_0003ENSG00000123364ENST00000243056ENSG00000249641ENST00000512916ENSG00000260030ENST00000566418ENSG00000260492ENST00000570015CIL_00033H_0004ENSMUSG00000001655ENSMUST00000001700ENSMUSG00000023055ENSMUST00000023818ENSMUST00000166943ENSMUST00000168112ENSMUST00000171838
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016391 ENSDART00000008409 N/A N/A N/A 2.066±1.34 N/A N/A 0.855±0.82 N/A 0.370±0.00 N/A 158.323±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036695 ENSDART00000103150 N/A N/A N/A 6.193±2.98 N/A N/A 4.270±0.00 N/A 0.547±0.00 N/A N/A N/A N/A N/A
ENSDART00000129574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070353 ENSDART00000103149 N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123364 ENST00000243056 0.206±0.00 0.696±0.00 N/A N/A 0.271±0.00 N/A N/A 0.077±0.00 N/A N/A N/A 0.913±0.40 0.216±0.12 0.549±0.16
ENSG00000249641 ENST00000512916 0.089±0.00 0.402±0.00 N/A N/A 0.260±0.00 N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 0.057±0.00
ENSG00000260030 ENST00000566418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A 0.184±0.01
ENSG00000260492 ENST00000570015 N/A 0.098±0.00 N/A 0.565±0.00 N/A N/A 0.551±0.52 N/A N/A N/A N/A 0.065±0.00 N/A 0.199±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001655 ENSMUST00000001700 N/A N/A 0.061±0.01 0.037±0.01 0.048±0.00 N/A N/A N/A N/A N/A 0.039±0.03 0.022±0.00 0.234±0.15 0.012±0.00
ENSMUSG00000023055 ENSMUST00000023818 21.293±0.63 30.386±2.65 15.403±2.72 10.956±0.61 16.599±3.65 9.748±0.64 29.710±7.42 20.993±1.29 6.184±2.31 27.073±7.28 27.059±1.80 24.337±5.41 10.736±6.99 4.486±1.60
ENSMUST00000166943 N/A N/A N/A 46.036±0.00 N/A N/A N/A N/A N/A N/A N/A 64.380±0.00 20.943±4.73 12.725±0.00
ENSMUST00000168112 N/A N/A N/A N/A 20.508±0.00 N/A N/A N/A N/A N/A N/A 13.465±0.00 5.251±0.00 N/A
ENSMUST00000171838 N/A 6.047±0.70 N/A 4.776±1.83 3.449±0.00 2.929±0.26 N/A 2.770±0.36 0.970±0.29 6.138±0.04 5.078±0.66 6.791±2.14 2.867±2.22 1.218±0.24

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