C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium binding and coiled-coil domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550804 CALCOCO1-001 ENSG00000012822 9606 - 12:53711790-53727440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000550804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000550804 20.427±0.00 11.536±0.00 4.606±0.00 11.660±3.12 12.967±6.37 14.616±10.43 11.238±5.57 6.063±4.23 11.453±0.00 10.698±0.04 15.823±7.20 8.659±6.78 15.777±0.77 7.128±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_00003I CIL_00003I_0001 CGP 12:53632726-53727745
CIL_00033H CIL_00033H_0003 CGP 12:53708517-53946544

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0003682 IEA chromatin binding
GO:0003712 IDA transcription cofactor activity
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 ISS transcription, DNA-templated
GO:0007165 ISS signal transduction
GO:0008013 IPI beta-catenin binding
GO:0008022 IPI protein C-terminus binding
GO:0016055 IEA Wnt signaling pathway
GO:0030374 IDA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 ISS intracellular steroid hormone receptor signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070016 IPI armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023818 Calcoco1-001 protein_coding Mus_musculus 0 2501
ENSMUST00000171838 Calcoco1-002 protein_coding Mus_musculus 0 2294
ENSMUST00000166943 Calcoco1-004 retained_intron Mus_musculus 0 750
ENSMUST00000168112 Calcoco1-003 protein_coding Mus_musculus 0 507

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