C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium binding and coiled coil domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023055 Calcoco1 10090 - 15:102706779-102722178 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023818 Calcoco1-001 102706779-102722178 protein_coding
  ENSMUST00000166943 Calcoco1-004 102710225-102715796 retained_intron
  ENSMUST00000168112 Calcoco1-003 102706972-102709902 protein_coding
  ENSMUST00000171838 Calcoco1-002 102707585-102722131 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023818ENSMUST00000166943ENSMUST00000168112ENSMUST00000171838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023818 21.293±0.63 30.386±2.65 15.403±2.72 10.956±0.61 16.599±3.65 9.748±0.64 29.710±7.42 20.993±1.29 6.184±2.31 27.073±7.28 27.059±1.80 24.337±5.41 10.736±6.99 4.486±1.60
ENSMUST00000166943 N/A N/A N/A 46.036±0.00 N/A N/A N/A N/A N/A N/A N/A 64.380±0.00 20.943±4.73 12.725±0.00
ENSMUST00000168112 N/A N/A N/A N/A 20.508±0.00 N/A N/A N/A N/A N/A N/A 13.465±0.00 5.251±0.00 N/A
ENSMUST00000171838 N/A 6.047±0.70 N/A 4.776±1.83 3.449±0.00 2.929±0.26 N/A 2.770±0.36 0.970±0.29 6.138±0.04 5.078±0.66 6.791±2.14 2.867±2.22 1.218±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_00003I CIL_00003I_0002 CGP 15:102662864-102722178
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00033H CIL_00033H_0004 CGP 15:102706779-102928814

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003682 IDA chromatin binding
GO:0003712 IEA transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0007165 IDA signal transduction
GO:0008013 IEA beta-catenin binding
GO:0008022 IEA protein C-terminus binding
GO:0016055 IEA Wnt signaling pathway
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030518 IDA intracellular steroid hormone receptor signaling pathway
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0070016 IEA armadillo repeat domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016391 calcoco1b calcium binding and coiled-coil domain 1b protein_coding Danio_rerio
ENSDARG00000036695 calcoco1a calcium binding and coiled-coil domain 1a protein_coding Danio_rerio
ENSG00000012822 CALCOCO1 calcium binding and coiled-coil domain 1 protein_coding Homo_sapiens

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