C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 30 (zinc transporter), member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000014824 SLC30A9 9606 + 4:41990472-42090457 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264451 SLC30A9-001 41990472-42090457 protein_coding
  ENST00000505523 SLC30A9-006 42070189-42086376 retained_intron
  ENST00000509683 SLC30A9-005 42063034-42078851 retained_intron
  ENST00000510460 SLC30A9-004 41990527-42020775 retained_intron
  ENST00000513699 SLC30A9-002 41990502-42086369 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264451ENST00000505523ENST00000513699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264451 3.381±0.00 4.250±0.00 3.126±0.00 8.762±2.37 3.597±0.16 3.810±0.33 2.648±0.00 1.352±0.21 2.917±0.00 1.939±1.40 0.814±0.00 2.269±1.62 2.484±0.34 3.020±1.09
ENST00000505523 N/A N/A 11.775±0.00 16.529±0.00 N/A N/A 3.690±0.00 3.333±0.00 4.202±0.00 N/A 3.760±0.00 4.807±2.00 12.555±0.00 11.578±0.00
ENST00000513699 5.726±0.00 3.990±0.00 N/A 15.867±0.00 4.233±1.64 5.186±1.50 9.293±6.58 6.548±5.20 2.300±0.00 3.868±0.96 4.138±0.00 2.895±1.36 2.724±1.01 6.217±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0001 UCNEbase 4:41748045-42425642
CIL_0007YP CIL_0007YP_0001 VISTA 4:41848074-42449047
CIL_0002Z2 CIL_0002Z2_0001 CGP 4:41990472-42152878

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005856 IDA cytoskeleton
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006812 IEA cation transport
GO:0006829 IEA zinc ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0055085 IEA transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057272 slc30a9 solute carrier family 30 (zinc transporter), member 9 protein_coding Danio_rerio
ENSMUSG00000029221 Slc30a9 solute carrier family 30 (zinc transporter), member 9 protein_coding Mus_musculus

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