C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 30 (zinc transporter), member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029221 Slc30a9 10090 + 5:67306955-67358565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113676 Slc30a9-002 67306955-67355336 protein_coding
  ENSMUST00000159907 Slc30a9-004 67315677-67318915 processed_transcript
  ENSMUST00000161169 Slc30a9-003 67332118-67353355 retained_intron
  ENSMUST00000162372 Slc30a9-001 67306955-67358565 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113676ENSMUST00000161169ENSMUST00000162372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113676 15.014±2.90 38.061±24.24 14.013±2.00 26.830±10.66 16.943±5.99 8.614±4.62 22.896±3.77 33.981±4.05 13.476±3.33 23.921±4.93 9.048±6.08 24.491±9.92 13.644±3.12 13.261±2.69
ENSMUST00000161169 N/A N/A 1.311±0.00 2.645±0.68 3.499±0.00 N/A N/A N/A 2.062±0.19 N/A N/A N/A 1.562±0.14 N/A
ENSMUST00000162372 3.770±0.50 5.276±0.38 4.685±0.42 6.845±0.71 3.568±0.57 5.441±0.82 5.436±0.86 12.206±1.02 4.206±0.99 5.038±0.81 3.043±1.10 9.404±2.63 2.900±1.27 2.272±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0002 UCNEbase 5:67098377-67633824
CIL_0007YP CIL_0007YP_0002 VISTA 5:67123705-67724669
CIL_0002Z2 CIL_0002Z2_0002 CGP 5:67306955-67427799

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005634 ISO nucleus
GO:0005737 ISO cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006829 IEA zinc ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030374 IGI ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057272 slc30a9 solute carrier family 30 (zinc transporter), member 9 protein_coding Danio_rerio
ENSG00000014824 SLC30A9 solute carrier family 30 (zinc transporter), member 9 protein_coding Homo_sapiens

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