C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 30 (zinc transporter), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264451 SLC30A9-001 ENSG00000014824 9606 + 4:41990472-42090457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264451 3.381±0.00 4.250±0.00 3.126±0.00 8.762±2.37 3.597±0.16 3.810±0.33 2.648±0.00 1.352±0.21 2.917±0.00 1.939±1.40 0.814±0.00 2.269±1.62 2.484±0.34 3.020±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OI CIL_0007OI_0001 UCNEbase 4:41748045-42425642
CIL_0007YP CIL_0007YP_0001 VISTA 4:41848074-42449047
CIL_0002Z2 CIL_0002Z2_0001 CGP 4:41990472-42152878

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005856 IDA cytoskeleton
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006812 IEA cation transport
GO:0006829 IEA zinc ion transport
GO:0008324 IEA cation transmembrane transporter activity
GO:0016021 IEA integral component of membrane
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0055085 IEA transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162372 Slc30a9-001 protein_coding Mus_musculus 0 2017
ENSMUST00000113676 Slc30a9-002 protein_coding Mus_musculus 0 1757
ENSMUST00000161169 Slc30a9-003 retained_intron Mus_musculus 0 767

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