C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Z2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000014824-ENSG00000188848 CGP 9606 4:41990472-42152878
GeneTranscriptPositionBiotype
ENSG00000014824 (SLC30A9)
solute carrier family 30 (zinc transporter), member 9 		ENST00000264451 (SLC30A9-001) 41990472-42090457 protein_coding
ENST00000505523 (SLC30A9-006) 42070189-42086376 retained_intron
ENST00000509683 (SLC30A9-005) 42063034-42078851 retained_intron
ENST00000510460 (SLC30A9-004) 41990527-42020775 retained_intron
ENST00000513699 (SLC30A9-002) 41990502-42086369 nonsense_mediated_decay
ENSG00000188848 (BEND4)
BEN domain containing 4 		ENST00000502486 (BEND4-001) 42110938-42152878 protein_coding
ENST00000504360 (BEND4-002) 42110940-42152878 protein_coding
ENST00000611697 (BEND4-201) 42117440-42152183 protein_coding
ENSG00000249212 (ATP1B1P1)
ATPase, Na+/K+ transporting, beta 1 polypeptide pseudogene 1 		ENST00000509767 (ATP1B1P1-001) 42029209-42030123 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0002Z2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029221-ENSMUSG00000092060 CGP 10090 5:67306955-67427799
GeneTranscriptPositionBiotype
ENSMUSG00000029221 (Slc30a9)
solute carrier family 30 (zinc transporter), member 9 		ENSMUST00000113676 (Slc30a9-002) 67306955-67355336 protein_coding
ENSMUST00000159907 (Slc30a9-004) 67315677-67318915 processed_transcript
ENSMUST00000161169 (Slc30a9-003) 67332118-67353355 retained_intron
ENSMUST00000162372 (Slc30a9-001) 67306955-67358565 protein_coding
ENSMUSG00000092060 (Bend4)
BEN domain containing 4 		ENSMUST00000169190 (Bend4-201) 67392147-67427799 protein_coding
ENSMUSG00000097840 (Gm26756)
predicted gene, 26756 		ENSMUST00000181689 (Gm26756-201) 67427680-67437990 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z2_0001ENSG00000014824ENST00000264451ENST00000505523ENST00000509683ENST00000510460ENST00000513699ENSG00000188848ENST00000502486ENST00000504360ENST00000611697ENSG00000249212ENST00000509767CIL_0002Z2_0002ENSMUSG00000029221ENSMUST00000113676ENSMUST00000159907ENSMUST00000161169ENSMUST00000162372ENSMUSG00000092060ENSMUST00000169190ENSMUSG00000097840ENSMUST00000181689
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Z2_0001ENSG00000014824ENST00000264451ENST00000505523ENST00000513699ENSG00000188848ENST00000502486ENST00000504360ENST00000611697ENSG00000249212ENST00000509767CIL_0002Z2_0002ENSMUSG00000029221ENSMUST00000113676ENSMUST00000161169ENSMUST00000162372ENSMUSG00000092060ENSMUST00000169190ENSMUSG00000097840ENSMUST00000181689
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000014824 ENST00000264451 3.381±0.00 4.250±0.00 3.126±0.00 8.762±2.37 3.597±0.16 3.810±0.33 2.648±0.00 1.352±0.21 2.917±0.00 1.939±1.40 0.814±0.00 2.269±1.62 2.484±0.34 3.020±1.09
ENST00000505523 N/A N/A 11.775±0.00 16.529±0.00 N/A N/A 3.690±0.00 3.333±0.00 4.202±0.00 N/A 3.760±0.00 4.807±2.00 12.555±0.00 11.578±0.00
ENST00000509683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513699 5.726±0.00 3.990±0.00 N/A 15.867±0.00 4.233±1.64 5.186±1.50 9.293±6.58 6.548±5.20 2.300±0.00 3.868±0.96 4.138±0.00 2.895±1.36 2.724±1.01 6.217±0.51
ENSG00000188848 ENST00000502486 N/A N/A N/A N/A N/A N/A 0.001±0.00 0.001±0.00 0.001±0.00 N/A 0.001±0.00 0.002±0.00 0.007±0.00 0.845±0.00
ENST00000504360 N/A N/A N/A 0.392±0.00 0.002±0.00 0.098±0.07 0.005±0.00 0.007±0.00 0.001±0.00 0.040±0.04 0.005±0.00 0.029±0.02 0.022±0.00 1.831±1.10
ENST00000611697 N/A N/A 0.073±0.00 N/A N/A N/A 0.079±0.00 0.037±0.00 N/A N/A N/A 0.192±0.00 N/A N/A
ENSG00000249212 ENST00000509767 0.053±0.00 0.096±0.00 0.442±0.00 0.130±0.10 0.780±0.00 0.499±0.40 0.298±0.24 0.546±0.44 0.794±0.00 0.672±0.59 N/A 0.195±0.20 0.048±0.01 0.062±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029221 ENSMUST00000113676 15.014±2.90 38.061±24.24 14.013±2.00 26.830±10.66 16.943±5.99 8.614±4.62 22.896±3.77 33.981±4.05 13.476±3.33 23.921±4.93 9.048±6.08 24.491±9.92 13.644±3.12 13.261±2.69
ENSMUST00000159907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161169 N/A N/A 1.311±0.00 2.645±0.68 3.499±0.00 N/A N/A N/A 2.062±0.19 N/A N/A N/A 1.562±0.14 N/A
ENSMUST00000162372 3.770±0.50 5.276±0.38 4.685±0.42 6.845±0.71 3.568±0.57 5.441±0.82 5.436±0.86 12.206±1.02 4.206±0.99 5.038±0.81 3.043±1.10 9.404±2.63 2.900±1.27 2.272±0.82
ENSMUSG00000092060 ENSMUST00000169190 0.422±0.15 0.118±0.07 0.461±0.10 1.252±0.97 0.617±0.01 0.183±0.03 0.388±0.05 0.146±0.03 0.123±0.07 0.355±0.24 0.048±0.02 1.570±0.91 5.211±2.42 1.796±1.03
ENSMUSG00000097840 ENSMUST00000181689 N/A N/A N/A N/A 0.400±0.00 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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