C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: aquarius intron-binding spliceosomal factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000021776 AQR 9606 - 15:34851782-34969839 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000156471 AQR-001 34851782-34969839 protein_coding
  ENST00000543879 AQR-002 34856351-34969733 nonsense_mediated_decay
  ENST00000558202 AQR-005 34948134-34964402 retained_intron
  ENST00000559090 AQR-003 34856500-34870264 retained_intron
  ENST00000559767 AQR-006 34856827-34863224 retained_intron
  ENST00000560117 AQR-004 34944304-34964453 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000156471ENST00000543879ENST00000559090ENST00000559767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000156471 1.350±0.00 1.721±0.00 1.544±0.00 2.004±0.08 1.646±0.13 1.787±0.00 0.811±0.14 2.877±0.00 1.719±0.88 1.826±1.25 1.128±0.00 2.416±1.25 1.398±0.22 1.950±0.49
ENST00000543879 3.049±0.00 1.946±0.00 2.142±0.00 N/A 2.316±0.74 0.710±0.00 1.218±0.02 1.811±0.83 2.795±2.03 1.679±0.00 0.547±0.04 1.262±0.21 2.950±0.56 3.789±0.00
ENST00000559090 N/A 1.333±0.00 N/A N/A N/A 1.517±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.017±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VH CIL_0008VH_0001 VISTA 15:34591431-35191947
CIL_0006HF CIL_0006HF_0001 CGP 15:34788096-34969839
CIL_0006HG CIL_0006HG_0001 CGP 15:34851782-34988287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016775 aqr aquarius homolog (mouse) protein_coding Danio_rerio
ENSMUSG00000040383 Aqr aquarius protein_coding Mus_musculus

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