C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008VH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm182 VISTA 9606 15:34591431-35191947
GeneTranscriptPositionBiotype
ENSG00000021776 (AQR)
aquarius intron-binding spliceosomal factor 		ENST00000156471 (AQR-001) 34851782-34969839 protein_coding
ENST00000543879 (AQR-002) 34856351-34969733 nonsense_mediated_decay
ENST00000558202 (AQR-005) 34948134-34964402 retained_intron
ENST00000559090 (AQR-003) 34856500-34870264 retained_intron
ENST00000559767 (AQR-006) 34856827-34863224 retained_intron
ENST00000560117 (AQR-004) 34944304-34964453 protein_coding
ENSG00000159248 (GJD2)
gap junction protein, delta 2, 36kDa 		ENST00000290374 (GJD2-001) 34751032-34754965 protein_coding
ENSG00000159251 (ACTC1)
actin, alpha, cardiac muscle 1 		ENST00000290378 (ACTC1-001) 34788096-34796139 protein_coding
ENST00000557860 (ACTC1-003) 34791158-34792851 processed_transcript
ENST00000560563 (ACTC1-004) 34791701-34792522 retained_intron
ENSG00000198146 (ZNF770)
zinc finger protein 770 		ENST00000356321 (ZNF770-001) 34978341-34988287 protein_coding
ENST00000559564 (ZNF770-002) 34983038-34988225 protein_coding
ENSG00000231409 (RP11-83J16.1)
 ENST00000491307 (RP11-83J16.1-001) 34943080-34943394 processed_pseudogene
ENSG00000250007 (RP11-814P5.1)
 ENST00000503496 (RP11-814P5.1-001) 34755084-34812923 antisense
ENST00000558707 (RP11-814P5.1-002) 34755162-34790173 antisense
ENSG00000255192 (NANOGP8)
Nanog homeobox pseudogene 8 		ENST00000528386 (NANOGP8-001) 35084195-35085110 processed_pseudogene
ENSG00000259181 (RP11-463I20.3)
 ENST00000560140 (RP11-463I20.3-001) 34993646-35003221 lincRNA
ENSG00000259336 (RP11-323I15.5)
 ENST00000559246 (RP11-323I15.5-001) 35099022-35169698 lincRNA
ENSG00000259397 (RP11-323I15.2)
 ENST00000594613 (RP11-323I15.2-001) 35092481-35093210 processed_pseudogene
ENSG00000259516 (ANP32AP1)
acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 		ENST00000559548 (ANP32AP1-001) 35237326-35238062 transcribed_processed_pseudogene
ENST00000560832 (ANP32AP1-002) 35181799-35238197 processed_transcript
ENSG00000259587 (RP11-463I20.2)
 ENST00000560683 (RP11-463I20.2-001) 35008469-35011191 lincRNA
ENSG00000259592 (PRELID1P4)
PRELI domain containing 1 pseudogene 4 		ENST00000561466 (PRELID1P4-001) 35121573-35122084 processed_pseudogene
ENSG00000259665 (RP11-323I15.3)
 ENST00000558497 (RP11-323I15.3-001) 35081144-35081513 processed_pseudogene
ENSG00000259751 (RP11-83J16.3)
 ENST00000559655 (RP11-83J16.3-001) 34849137-34850395 processed_pseudogene
ENSG00000261304 (CTD-2125J1.1)
 ENST00000565706 (CTD-2125J1.1-001) 34651135-34655764 lincRNA
ENSG00000279364 (RP11-463I20.1)
 ENST00000623582 (RP11-463I20.1-001) 34978351-34980084 TEC
ENSG00000280396 (RP11-463I20.4)
 ENST00000624413 (RP11-463I20.4-001) 34999902-35000270 TEC
CIL_0008VH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm182 VISTA 10090 2:113823388-114423882
GeneTranscriptPositionBiotype
ENSMUSG00000023236 (Scg5)
secretogranin V 		ENSMUST00000024005 (Scg5-001) 113776362-113829121 protein_coding
ENSMUST00000139975 (Scg5-002) 113827340-113828762 processed_transcript
ENSMUSG00000040321 (Zfp770)
zinc finger protein 770 		ENSMUST00000050668 (Zfp770-001) 114193461-114201469 protein_coding
ENSMUST00000123562 (Zfp770-002) 114198560-114201440 processed_transcript
ENSMUSG00000040383 (Aqr)
aquarius 		ENSMUST00000043160 (Aqr-001) 114101170-114175339 protein_coding
ENSMUST00000102543 (Aqr-004) 114105162-114175277 protein_coding
ENSMUST00000125460 (Aqr-005) 114133368-114175246 processed_transcript
ENSMUST00000126701 (Aqr-009) 114132987-114141143 processed_transcript
ENSMUST00000129504 (Aqr-003) 114158599-114175338 processed_transcript
ENSMUST00000131785 (Aqr-002) 114152743-114175338 processed_transcript
ENSMUST00000140441 (Aqr-006) 114112126-114119187 processed_transcript
ENSMUST00000147191 (Aqr-007) 114170045-114181048 processed_transcript
ENSMUST00000154317 (Aqr-008) 114170045-114187024 processed_transcript
ENSMUSG00000041219 (Arhgap11a)
Rho GTPase activating protein 11A 		ENSMUST00000102545 (Arhgap11a-001) 113831546-113848656 protein_coding
ENSMUST00000110947 (Arhgap11a-003) 113833261-113848297 protein_coding
ENSMUST00000110948 (Arhgap11a-002) 113831492-113848661 protein_coding
ENSMUST00000110949 (Arhgap11a-201) 113831495-113848615 protein_coding
ENSMUSG00000068614 (Actc1)
actin, alpha, cardiac muscle 1 		ENSMUST00000090269 (Actc1-001) 114047282-114052887 protein_coding
ENSMUST00000149125 (Actc1-002) 114051903-114053548 protein_coding
ENSMUSG00000068615 (Gjd2)
gap junction protein, delta 2 		ENSMUST00000090275 (Gjd2-001) 114009601-114013619 protein_coding
ENSMUSG00000084620 (Gm25103)
predicted gene, 25103 		ENSMUST00000122671 (Gm25103-201) 114270111-114270428 misc_RNA
ENSMUSG00000092201 (A530058N18Rik)
RIKEN cDNA A530058N18 gene 		ENSMUST00000131299 (A530058N18Rik-001) 114013563-114068324 antisense
ENSMUST00000140041 (A530058N18Rik-002) 114013567-114061498 processed_transcript
ENSMUSG00000092397 (C130080G10Rik)
RIKEN cDNA C130080G10 gene 		ENSMUST00000134456 (C130080G10Rik-004) 114056288-114061248 antisense
ENSMUST00000150005 (C130080G10Rik-002) 114054396-114061440 antisense
ENSMUST00000154140 (C130080G10Rik-001) 114054335-114061463 antisense
ENSMUST00000155185 (C130080G10Rik-005) 114056313-114064868 antisense
ENSMUST00000155678 (C130080G10Rik-003) 114055247-114060942 antisense
ENSMUSG00000096006 (Gm21596)
predicted gene, 21596 		ENSMUST00000178049 (Gm21596-201) 113919247-113920562 processed_pseudogene
ENSMUSG00000101266 (RP23-55M21.1)
predicted gene 29234 		ENSMUST00000187452 (RP23-55M21.1-001) 114272174-114273435 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000021776 ENST00000156471 1.350±0.00 1.721±0.00 1.544±0.00 2.004±0.08 1.646±0.13 1.787±0.00 0.811±0.14 2.877±0.00 1.719±0.88 1.826±1.25 1.128±0.00 2.416±1.25 1.398±0.22 1.950±0.49
ENST00000543879 3.049±0.00 1.946±0.00 2.142±0.00 N/A 2.316±0.74 0.710±0.00 1.218±0.02 1.811±0.83 2.795±2.03 1.679±0.00 0.547±0.04 1.262±0.21 2.950±0.56 3.789±0.00
ENST00000558202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559090 N/A 1.333±0.00 N/A N/A N/A 1.517±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.017±0.00 N/A N/A
ENST00000560117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159248 ENST00000290374 N/A N/A 0.063±0.00 0.432±0.24 N/A N/A 0.055±0.01 0.028±0.00 N/A 0.069±0.00 N/A 0.012±0.00 N/A 0.082±0.02
ENSG00000159251 ENST00000290378 0.512±0.00 1.828±0.00 0.029±0.00 0.145±0.00 0.222±0.07 0.223±0.20 487.553±367.86 1.463±0.00 8.394±8.29 1.834±0.26 16.303±11.93 0.223±0.12 1.676±1.12 6.058±5.92
ENST00000557860 1.066±0.00 6.779±0.00 N/A 0.309±0.00 0.846±0.47 0.964±0.00 1216.198±948.33 4.795±0.00 27.069±26.90 4.392±0.00 74.246±0.00 0.635±0.21 3.290±0.37 15.083±14.19
ENST00000560563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198146 ENST00000356321 N/A N/A 3.237±0.00 0.963±0.00 0.678±0.00 1.050±0.00 0.821±0.00 2.476±0.00 1.508±0.00 3.098±1.68 N/A 1.832±0.15 1.917±0.51 2.361±0.00
ENST00000559564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231409 ENST00000491307 0.049±0.00 0.308±0.00 1.411±0.00 N/A N/A 0.133±0.09 N/A N/A 0.284±0.00 0.252±0.00 0.047±0.00 1.060±0.41 0.601±0.14 0.046±0.00
ENSG00000250007 ENST00000503496 N/A N/A N/A 0.149±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00
ENST00000558707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255192 ENST00000528386 N/A N/A 0.107±0.00 N/A 0.278±0.00 N/A 0.098±0.00 0.069±0.00 0.152±0.00 N/A N/A 0.382±0.00 0.041±0.00 0.316±0.00
ENSG00000259181 ENST00000560140 N/A N/A N/A N/A 0.195±0.00 N/A 0.179±0.00 0.074±0.00 N/A N/A N/A 0.088±0.00 N/A 0.298±0.00
ENSG00000259336 ENST00000559246 N/A 0.051±0.00 1.004±0.00 0.064±0.03 0.034±0.00 0.446±0.00 0.021±0.00 N/A 0.249±0.00 N/A N/A 0.179±0.21 N/A 0.322±0.19
ENSG00000259397 ENST00000594613 0.027±0.00 0.086±0.00 0.865±0.00 0.080±0.05 0.502±0.00 0.027±0.00 0.109±0.03 N/A 0.624±0.00 0.225±0.00 0.026±0.00 0.065±0.00 0.128±0.03 0.484±0.08
ENSG00000259516 ENST00000559548 N/A N/A 0.058±0.00 0.069±0.00 N/A 0.063±0.00 0.063±0.00 N/A 0.021±0.00 N/A N/A N/A N/A 0.054±0.00
ENST00000560832 0.098±0.00 0.075±0.00 N/A N/A 0.076±0.00 N/A N/A 0.078±0.00 0.058±0.00 0.015±0.00 N/A 0.040±0.00 0.036±0.01 N/A
ENSG00000259587 ENST00000560683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 0.146±0.02 1.030±0.63
ENSG00000259592 ENST00000561466 0.087±0.00 0.608±0.00 N/A 0.390±0.23 0.102±0.00 0.648±0.56 0.057±0.01 0.301±0.00 0.229±0.05 0.362±0.31 0.398±0.36 0.339±0.17 0.126±0.03 0.344±0.00
ENSG00000259665 ENST00000558497 N/A 0.155±0.00 N/A 0.031±0.00 0.058±0.00 N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A 0.252±0.00
ENSG00000259751 ENST00000559655 N/A 0.168±0.00 N/A 0.039±0.00 0.025±0.00 0.011±0.00 N/A 0.072±0.00 N/A N/A 0.010±0.00 0.222±0.25 0.045±0.00 0.044±0.03
ENSG00000261304 ENST00000565706 N/A N/A N/A N/A 0.030±0.00 0.225±0.00 N/A N/A N/A 0.055±0.00 0.027±0.00 N/A N/A 0.252±0.01
ENSG00000279364 ENST00000623582 N/A 10.150±0.00 3.229±0.00 11.449±0.00 N/A 3.950±0.00 2.108±0.00 12.630±7.69 N/A 5.088±0.00 1.242±0.00 10.221±4.93 5.885±0.00 12.663±5.72
ENSG00000280396 ENST00000624413 0.074±0.00 0.244±0.00 1.538±0.00 0.038±0.00 0.167±0.00 0.030±0.00 0.131±0.00 0.202±0.00 0.030±0.00 0.198±0.00 N/A N/A N/A 0.067±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023236 ENSMUST00000024005 0.254±0.22 9.420±2.78 0.489±0.02 45.184±6.15 0.206±0.16 2.881±0.73 0.037±0.01 4.321±0.31 0.066±0.04 0.377±0.05 0.073±0.05 2.102±0.77 0.789±0.79 0.562±0.09
ENSMUST00000139975 N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A 0.097±0.07 0.129±0.00 N/A N/A N/A N/A
ENSMUSG00000040321 ENSMUST00000050668 1.769±0.48 0.728±0.13 2.723±0.03 3.116±0.34 1.361±0.32 0.737±0.17 2.748±0.42 1.306±0.21 1.553±0.79 1.519±0.14 4.211±0.52 1.541±0.82 1.554±0.40 1.156±0.27
ENSMUST00000123562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040383 ENSMUST00000043160 9.643±2.58 16.511±1.90 7.214±0.80 10.990±5.47 11.426±2.99 10.474±1.42 4.123±0.97 8.598±1.70 7.550±3.63 12.215±0.72 2.504±0.48 14.336±4.07 8.003±2.83 6.068±2.65
ENSMUST00000102543 N/A N/A N/A N/A N/A N/A 0.893±0.14 N/A N/A N/A 0.437±0.02 4.332±1.66 6.713±0.00 1.422±0.00
ENSMUST00000125460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041219 ENSMUST00000102545 0.705±0.23 N/A 0.480±0.02 2.830±1.95 0.307±0.00 N/A N/A N/A 9.056±3.32 0.433±0.05 0.141±0.04 1.984±0.39 0.325±0.00 0.622±0.01
ENSMUST00000110947 0.200±0.11 0.363±0.00 N/A N/A 0.481±0.10 0.852±0.56 0.151±0.00 N/A N/A N/A 0.077±0.00 N/A N/A 0.512±0.05
ENSMUST00000110948 0.181±0.11 0.184±0.10 0.241±0.05 1.666±0.05 0.383±0.19 0.498±0.19 0.111±0.08 0.261±0.11 1.863±1.66 0.381±0.04 0.070±0.00 1.960±0.69 1.942±1.08 0.551±0.15
ENSMUST00000110949 N/A 0.235±0.08 0.351±0.03 0.775±0.53 0.444±0.15 1.060±0.42 0.080±0.03 0.253±0.11 2.754±0.90 N/A 0.195±0.05 1.552±0.86 3.584±3.84 N/A
ENSMUSG00000068614 ENSMUST00000090269 0.812±0.15 0.055±0.01 167.921±22.88 3.082±2.35 15.927±15.50 2.513±1.00 10876.800±767.49 1.767±0.13 3.329±9.29 263.991±41.03 79.346±30.10 0.459±0.24 3.693±1.44 0.276±0.02
ENSMUST00000149125 N/A 0.586±0.22 N/A 0.286±0.00 N/A N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A
ENSMUSG00000068615 ENSMUST00000090275 N/A 1.727±0.70 N/A 6.932±4.13 N/A 0.204±0.13 N/A 0.026±0.00 0.023±0.02 N/A N/A N/A 0.009±0.00 0.044±0.02
ENSMUSG00000084620 ENSMUST00000122671 N/A N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092201 ENSMUST00000131299 N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.219±0.02 0.020±0.00 N/A N/A
ENSMUSG00000092397 ENSMUST00000134456 N/A N/A N/A N/A N/A N/A 58.278±18.41 N/A 0.087±0.04 1.325±0.47 0.295±0.00 N/A N/A N/A
ENSMUST00000150005 N/A N/A 0.015±0.00 N/A N/A N/A 22.049±3.41 N/A 0.017±0.00 0.967±0.62 0.101±0.02 N/A N/A N/A
ENSMUST00000154140 N/A N/A 0.015±0.00 N/A N/A N/A 30.205±6.26 0.024±0.00 0.035±0.02 0.722±0.24 0.077±0.03 N/A N/A N/A
ENSMUST00000155185 N/A N/A 0.044±0.00 N/A 0.042±0.01 N/A N/A 0.035±0.00 0.035±0.01 N/A 0.113±0.04 0.046±0.00 N/A N/A
ENSMUST00000155678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A
ENSMUSG00000096006 ENSMUST00000178049 0.489±0.25 0.182±0.06 0.461±0.21 4.160±4.98 0.453±0.22 0.370±0.16 0.288±0.12 0.399±0.15 5.561±11.42 0.620±0.16 0.167±0.05 1.415±1.07 0.620±0.85 0.269±0.03
ENSMUSG00000101266 ENSMUST00000187452 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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