C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aquarius intron-binding spliceosomal factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543879 AQR-002 ENSG00000021776 9606 - 15:34856351-34969733 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000543879
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000543879 3.049±0.00 1.946±0.00 2.142±0.00 2.316±0.74 0.710±0.00 1.218±0.02 1.811±0.83 2.795±2.03 1.679±0.00 0.547±0.04 1.262±0.21 2.950±0.56 3.789±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VH CIL_0008VH_0001 VISTA 15:34591431-35191947
CIL_0006HF CIL_0006HF_0001 CGP 15:34788096-34969839
CIL_0006HG CIL_0006HG_0001 CGP 15:34851782-34988287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005681 IEA spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102543 Aqr-004 protein_coding Mus_musculus 0 3995
ENSMUST00000043160 Aqr-001 protein_coding Mus_musculus 0 3995
ENSMUST00000125460 Aqr-005 processed_transcript Mus_musculus 0 1807
ENSMUST00000131785 Aqr-002 processed_transcript Mus_musculus 0 822
ENSMUST00000126701 Aqr-009 processed_transcript Mus_musculus 0 671
ENSMUST00000140441 Aqr-006 processed_transcript Mus_musculus 0 433

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