C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374012 PHF20-003 ENSG00000025293 9606 + 20:35771983-35950381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000374012
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000374012 6.259±0.00 2.208±0.00 0.640±0.00 5.242±1.25 2.438±1.46 2.086±0.43 2.555±1.53 2.051±0.75 3.555±0.00 3.491±1.75 3.536±1.96 3.545±0.51 4.757±2.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381
CIL_00056T CIL_00056T_0001 CGP 20:35771974-35959472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 IDA histone acetyltransferase complex
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031965 IDA nuclear membrane
GO:0043981 IDA histone H4-K5 acetylation
GO:0043982 IDA histone H4-K8 acetylation
GO:0043984 IDA histone H4-K16 acetylation
GO:0043995 IDA histone acetyltransferase activity (H4-K5 specific)
GO:0043996 IDA histone acetyltransferase activity (H4-K8 specific)
GO:0046872 IEA metal ion binding
GO:0046972 IDA histone acetyltransferase activity (H4-K16 specific)
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037401 Phf20-001 protein_coding Mus_musculus 0 4113
ENSMUST00000152617 Phf20-004 processed_transcript Mus_musculus 0 3777
ENSMUST00000185066 Gm18048-001 processed_pseudogene Mus_musculus 0 1591
ENSMUST00000122814 Phf20-009 processed_transcript Mus_musculus 0 791
ENSMUST00000131479 Phf20-006 processed_transcript Mus_musculus 0 708
ENSMUST00000145731 Phf20-010 protein_coding Mus_musculus 0 512
ENSMUST00000132352 Phf20-007 retained_intron Mus_musculus 0 490
ENSMUST00000132129 Phf20-002 retained_intron Mus_musculus 0 472
ENSMUST00000147242 Phf20-008 processed_transcript Mus_musculus 0 385
ENSMUST00000147234 Phf20-011 processed_transcript Mus_musculus 0 327
ENSMUST00000135796 Phf20-003 retained_intron Mus_musculus 0 250
ENSMUST00000153822 Phf20-005 processed_transcript Mus_musculus 0 233

Loading