C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: enhancer of mRNA decapping 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000038358 EDC4 9606 + 16:67873023-67884503 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358933 EDC4-001 67873023-67884503 protein_coding
  ENST00000536072 EDC4-003 67873372-67880489 retained_intron
  ENST00000572031 EDC4-007 67878872-67879739 retained_intron
  ENST00000572221 EDC4-002 67873052-67884495 retained_intron
  ENST00000572724 EDC4-008 67880749-67881349 retained_intron
  ENST00000573985 EDC4-015 67882487-67884165 protein_coding
  ENST00000573992 EDC4-004 67877489-67884497 retained_intron
  ENST00000574770 EDC4-005 67876485-67879779 processed_transcript
  ENST00000575033 EDC4-013 67882780-67884123 protein_coding
  ENST00000575507 EDC4-012 67882067-67882923 retained_intron
  ENST00000575514 EDC4-011 67880916-67882516 retained_intron
  ENST00000576972 EDC4-010 67880747-67881796 retained_intron
  ENST00000577028 EDC4-009 67880349-67881180 retained_intron
  ENST00000577105 EDC4-014 67882449-67884322 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358933ENST00000572221ENST00000573992ENST00000574770ENST00000575514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358933 4.158±0.00 4.161±0.00 1.124±0.00 6.307±3.17 3.175±1.67 3.849±0.00 2.293±0.00 5.681±3.82 2.259±0.00 3.538±2.57 5.146±3.37 5.124±3.55 5.189±1.24 8.168±1.23
ENST00000572221 N/A 3.459±0.00 N/A N/A N/A 1.062±0.00 0.828±0.00 N/A 0.779±0.00 1.524±1.14 N/A 2.280±0.32 N/A N/A
ENST00000573992 2.441±0.00 5.305±0.00 N/A 1.344±0.00 2.771±0.00 2.216±0.27 0.968±0.53 N/A 1.418±0.06 N/A 6.218±0.00 6.051±1.52 3.188±0.72 6.923±0.62
ENST00000574770 N/A N/A 1.164±0.00 2.450±0.00 3.919±0.00 4.155±0.00 1.569±0.46 N/A 4.603±0.00 4.808±0.00 4.595±0.00 4.374±0.00 N/A N/A
ENST00000575514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.043±0.00 13.228±0.00 7.476±0.00 23.628±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0001 CGP 16:67846732-67884503
CIL_0007FU CIL_0007FU_0001 CGP 16:67873023-67888855

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062266 edc4 enhancer of mRNA decapping 4 protein_coding Danio_rerio
ENSMUSG00000036270 Edc4 enhancer of mRNA decapping 4 protein_coding Mus_musculus

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