C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: enhancer of mRNA decapping 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358933 EDC4-001 ENSG00000038358 9606 + 16:67873023-67884503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358933
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358933 4.158±0.00 4.161±0.00 1.124±0.00 6.307±3.17 3.175±1.67 3.849±0.00 2.293±0.00 5.681±3.82 2.259±0.00 3.538±2.57 5.146±3.37 5.124±3.55 5.189±1.24 8.168±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0001 CGP 16:67846732-67884503
CIL_0007FU CIL_0007FU_0001 CGP 16:67873023-67888855

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0008150 ND biological_process
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040254 Edc4-001 protein_coding Mus_musculus 0 5306
ENSMUST00000119261 Edc4-002 protein_coding Mus_musculus 0 2963
ENSMUST00000136048 Edc4-003 nonsense_mediated_decay Mus_musculus 0 2032
ENSMUST00000132680 Edc4-006 protein_coding Mus_musculus 0 1362
ENSMUST00000145618 Edc4-005 protein_coding Mus_musculus 0 894
ENSMUST00000156357 Edc4-007 retained_intron Mus_musculus 0 704
ENSMUST00000139154 Edc4-004 retained_intron Mus_musculus 0 623
ENSDART00000089787 edc4-201 protein_coding Danio_rerio 0 350
ENSDART00000132381 edc4-001 protein_coding Danio_rerio 0 350

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