C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: enhancer of mRNA decapping 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036270 Edc4 10090 + 8:105880881-105894908 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040254 Edc4-001 105880881-105893225 protein_coding
  ENSMUST00000119261 Edc4-002 105880951-105893208 protein_coding
  ENSMUST00000132680 Edc4-006 105887378-105889532 protein_coding
  ENSMUST00000136048 Edc4-003 105881077-105894908 nonsense_mediated_decay
  ENSMUST00000139154 Edc4-004 105886969-105888145 retained_intron
  ENSMUST00000145618 Edc4-005 105887392-105888713 protein_coding
  ENSMUST00000156357 Edc4-007 105890268-105891328 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040254ENSMUST00000119261ENSMUST00000132680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040254 11.776±4.26 12.908±1.93 9.456±0.72 13.635±3.54 14.883±2.31 13.473±2.94 8.642±4.17 8.369±2.40 5.940±2.55 16.861±2.68 4.093±1.03 17.471±5.26 8.928±1.44 20.244±7.08
ENSMUST00000119261 3.885±0.71 6.140±1.77 1.587±0.00 4.041±0.07 5.413±1.13 3.943±0.37 1.868±0.19 2.808±1.37 2.433±1.09 4.213±0.57 1.339±0.62 8.361±2.70 2.922±1.47 4.071±1.69
ENSMUST00000132680 N/A 10.861±1.54 N/A N/A 10.844±0.00 10.860±0.99 N/A N/A 3.569±0.12 N/A N/A 19.946±2.51 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007FS CIL_0007FS_0002 CGP 8:105860634-105894908
CIL_0007FU CIL_0007FU_0002 CGP 8:105880881-105895023

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 ISO cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062266 edc4 enhancer of mRNA decapping 4 protein_coding Danio_rerio
ENSG00000038358 EDC4 enhancer of mRNA decapping 4 protein_coding Homo_sapiens

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