C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: staufen double-stranded RNA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000040341 STAU2 9606 - 8:73420369-73747708 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355780 STAU2-009 73549604-73746840 protein_coding
  ENST00000517542 STAU2-007 73551830-73746879 protein_coding
  ENST00000518502 STAU2-015 73552126-73746903 protein_coding
  ENST00000518767 STAU2-005 73552066-73747466 protein_coding
  ENST00000518981 STAU2-003 73551896-73747471 nonsense_mediated_decay
  ENST00000519818 STAU2-016 73688735-73746843 processed_transcript
  ENST00000519961 STAU2-012 73549692-73738344 protein_coding
  ENST00000520872 STAU2-024 73688651-73747473 processed_transcript
  ENST00000520945 STAU2-023 73673139-73746840 processed_transcript
  ENST00000521210 STAU2-011 73421212-73746840 protein_coding
  ENST00000521293 STAU2-026 73613891-73746840 processed_transcript
  ENST00000521419 STAU2-013 73653658-73746888 protein_coding
  ENST00000521447 STAU2-025 73613927-73746849 protein_coding
  ENST00000521451 STAU2-006 73550547-73746884 protein_coding
  ENST00000521727 STAU2-004 73549786-73747697 protein_coding
  ENST00000521736 STAU2-017 73673230-73746840 protein_coding
  ENST00000521845 STAU2-020 73673240-73746840 processed_transcript
  ENST00000522061 STAU2-022 73688753-73746840 processed_transcript
  ENST00000522509 STAU2-002 73551643-73747708 protein_coding
  ENST00000522695 STAU2-014 73420369-73738327 protein_coding
  ENST00000522818 STAU2-027 73420959-73458787 processed_transcript
  ENST00000522962 STAU2-021 73653498-73746818 processed_transcript
  ENST00000523160 STAU2-018 73738301-73747366 processed_transcript
  ENST00000523533 STAU2-029 73527369-73582830 protein_coding
  ENST00000523558 STAU2-010 73421130-73746840 protein_coding
  ENST00000524104 STAU2-008 73652257-73746840 protein_coding
  ENST00000524113 STAU2-028 73672982-73746840 retained_intron
  ENST00000524191 STAU2-019 73672184-73746882 processed_transcript
  ENST00000524300 STAU2-001 73420371-73746937 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355780ENST00000519961ENST00000520945ENST00000521210ENST00000522509ENST00000522695ENST00000524300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355780 1.944±0.00 2.725±0.00 1.104±0.00 10.836±0.00 2.791±0.00 1.729±0.01 N/A 1.899±0.00 1.484±0.00 3.729±1.05 N/A 3.122±0.64 2.171±0.83 3.160±0.00
ENST00000519961 N/A N/A N/A N/A N/A 1.411±0.00 2.005±0.00 2.032±0.00 0.877±0.00 N/A N/A N/A 1.197±0.00 N/A
ENST00000520945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.620±0.00 N/A N/A
ENST00000521210 N/A N/A N/A N/A N/A N/A 5.849±2.61 N/A N/A N/A 3.237±0.00 N/A N/A N/A
ENST00000522509 N/A N/A 1.746±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522695 3.250±0.00 N/A N/A N/A 4.769±0.00 2.962±0.00 8.209±0.00 5.126±0.00 N/A N/A 4.397±1.49 2.879±0.00 2.142±0.02 N/A
ENST00000524300 N/A N/A N/A N/A 4.112±0.00 N/A 5.144±0.00 N/A N/A N/A N/A N/A 2.144±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D6 CIL_0001D6_0001 CGP 8:73294612-73747708
CIL_0001NO CIL_0001NO_0001 CGP 8:73420369-73878854

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005874 IEA microtubule
GO:0006810 IEA transport
GO:0016020 IDA membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026801 stau2 staufen, RNA binding protein, homolog 2 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000025920 Stau2 staufen (RNA binding protein) homolog 2 (Drosophila) protein_coding Mus_musculus

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