C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000040341-ENSG00000258677 CGP 9606 8:73420369-73878854
GeneTranscriptPositionBiotype
ENSG00000040341 (STAU2)
staufen double-stranded RNA binding protein 2 		ENST00000355780 (STAU2-009) 73549604-73746840 protein_coding
ENST00000517542 (STAU2-007) 73551830-73746879 protein_coding
ENST00000518502 (STAU2-015) 73552126-73746903 protein_coding
ENST00000518767 (STAU2-005) 73552066-73747466 protein_coding
ENST00000518981 (STAU2-003) 73551896-73747471 nonsense_mediated_decay
ENST00000519818 (STAU2-016) 73688735-73746843 processed_transcript
ENST00000519961 (STAU2-012) 73549692-73738344 protein_coding
ENST00000520872 (STAU2-024) 73688651-73747473 processed_transcript
ENST00000520945 (STAU2-023) 73673139-73746840 processed_transcript
ENST00000521210 (STAU2-011) 73421212-73746840 protein_coding
ENST00000521293 (STAU2-026) 73613891-73746840 processed_transcript
ENST00000521419 (STAU2-013) 73653658-73746888 protein_coding
ENST00000521447 (STAU2-025) 73613927-73746849 protein_coding
ENST00000521451 (STAU2-006) 73550547-73746884 protein_coding
ENST00000521727 (STAU2-004) 73549786-73747697 protein_coding
ENST00000521736 (STAU2-017) 73673230-73746840 protein_coding
ENST00000521845 (STAU2-020) 73673240-73746840 processed_transcript
ENST00000522061 (STAU2-022) 73688753-73746840 processed_transcript
ENST00000522509 (STAU2-002) 73551643-73747708 protein_coding
ENST00000522695 (STAU2-014) 73420369-73738327 protein_coding
ENST00000522818 (STAU2-027) 73420959-73458787 processed_transcript
ENST00000522962 (STAU2-021) 73653498-73746818 processed_transcript
ENST00000523160 (STAU2-018) 73738301-73747366 processed_transcript
ENST00000523533 (STAU2-029) 73527369-73582830 protein_coding
ENST00000523558 (STAU2-010) 73421130-73746840 protein_coding
ENST00000524104 (STAU2-008) 73652257-73746840 protein_coding
ENST00000524113 (STAU2-028) 73672982-73746840 retained_intron
ENST00000524191 (STAU2-019) 73672184-73746882 processed_transcript
ENST00000524300 (STAU2-001) 73420371-73746937 protein_coding
ENSG00000253273 (RP11-99A14.1)
 ENST00000519383 (RP11-99A14.1-001) 73831143-73831947 unprocessed_pseudogene
ENSG00000253302 (STAU2-AS1)
STAU2 antisense RNA 1 		ENST00000517604 (STAU2-AS1-001) 73420074-73441526 antisense
ENST00000522703 (STAU2-AS1-002) 73420004-73439237 antisense
ENSG00000253383 (RP11-116B19.2)
 ENST00000522790 (RP11-116B19.2-001) 73590574-73590883 processed_pseudogene
ENSG00000254105 (VENTXP6)
VENT homeobox pseudogene 6 		ENST00000521543 (VENTXP6-001) 73651289-73651602 processed_pseudogene
ENSG00000254273 (RP11-181D18.4)
 ENST00000523233 (RP11-181D18.4-001) 73511276-73511654 processed_pseudogene
ENSG00000254538 (RP11-463D19.1)
 ENST00000533978 (RP11-463D19.1-001) 73670441-73728058 lincRNA
ENST00000534723 (RP11-463D19.1-002) 73727843-73732897 lincRNA
ENSG00000272469 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000607344 (Metazoa_SRP.1-233) 73833773-73834042 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001NO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025920-ENSMUSG00000025939 CGP 10090 1:16228674-16619489
GeneTranscriptPositionBiotype
ENSMUSG00000025920 (Stau2)
staufen (RNA binding protein) homolog 2 (Drosophila) 		ENSMUST00000027052 (Stau2-003) 16228810-16519306 protein_coding
ENSMUST00000054668 (Stau2-013) 16228801-16519228 protein_coding
ENSMUST00000115359 (Stau2-002) 16459715-16519260 protein_coding
ENSMUST00000115360 (Stau2-007) 16344198-16375395 processed_transcript
ENSMUST00000127420 (Stau2-005) 16344299-16519253 nonsense_mediated_decay
ENSMUST00000128957 (Stau2-006) 16343486-16519247 protein_coding
ENSMUST00000131257 (Stau2-015) 16343571-16520067 protein_coding
ENSMUST00000144138 (Stau2-017) 16460213-16520020 protein_coding
ENSMUST00000145092 (Stau2-011) 16460104-16520021 protein_coding
ENSMUST00000149320 (Stau2-014) 16345594-16519307 protein_coding
ENSMUST00000151888 (Stau2-010) 16394143-16519270 protein_coding
ENSMUST00000153966 (Stau2-008) 16440442-16520080 protein_coding
ENSMUST00000159558 (Stau2-016) 16343407-16519211 protein_coding
ENSMUST00000162007 (Stau2-004) 16344291-16519240 protein_coding
ENSMUST00000162435 (Stau2-009) 16228816-16520112 protein_coding
ENSMUST00000162627 (Stau2-012) 16228804-16519228 protein_coding
ENSMUST00000162751 (Stau2-001) 16228674-16519306 protein_coding
ENSMUSG00000025939 (Ube2w)
ubiquitin-conjugating enzyme E2W (putative) 		ENSMUST00000117146 (Ube2w-001) 16569782-16619489 protein_coding
ENSMUST00000132919 (Ube2w-002) 16601979-16619284 retained_intron
ENSMUST00000133639 (Ube2w-003) 16581936-16619259 nonsense_mediated_decay
ENSMUST00000136455 (Ube2w-004) 16584158-16619284 retained_intron
ENSMUST00000182080 (Ube2w-005) 16564338-16585398 processed_transcript
ENSMUST00000182554 (Ube2w-006) 16540790-16619312 protein_coding
ENSMUSG00000089982 (Gm7568)
predicted gene 7568 		ENSMUST00000159190 (Gm7568-002) 16253629-16258857 antisense
ENSMUST00000160446 (Gm7568-001) 16253592-16267921 antisense
ENSMUST00000161626 (Gm7568-003) 16253592-16258861 antisense
ENSMUSG00000100868 (RP24-73D23.1)
predicted gene 28095 		ENSMUST00000186343 (RP24-73D23.1-001) 16228506-16244062 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NO_0001ENSG00000040341ENST00000355780ENST00000517542ENST00000518502ENST00000518767ENST00000518981ENST00000519818ENST00000519961ENST00000520872ENST00000520945ENST00000521210ENST00000521293ENST00000521419ENST00000521447ENST00000521451ENST00000521727ENST00000521736ENST00000521845ENST00000522061ENST00000522509ENST00000522695ENST00000522818ENST00000522962ENST00000523160ENST00000523533ENST00000523558ENST00000524104ENST00000524113ENST00000524191ENST00000524300ENSG00000253273ENST00000519383ENSG00000253302ENST00000517604ENST00000522703ENSG00000253383ENST00000522790ENSG00000254105ENST00000521543ENSG00000254273ENST00000523233ENSG00000254538ENST00000533978ENST00000534723ENSG00000272469ENST00000607344CIL_0001NO_0002ENSMUSG00000025920ENSMUST00000027052ENSMUST00000054668ENSMUST00000115359ENSMUST00000115360ENSMUST00000127420ENSMUST00000128957ENSMUST00000131257ENSMUST00000144138ENSMUST00000145092ENSMUST00000149320ENSMUST00000151888ENSMUST00000153966ENSMUST00000159558ENSMUST00000162007ENSMUST00000162435ENSMUST00000162627ENSMUST00000162751ENSMUSG00000025939ENSMUST00000117146ENSMUST00000132919ENSMUST00000133639ENSMUST00000136455ENSMUST00000182080ENSMUST00000182554ENSMUSG00000089982ENSMUST00000159190ENSMUST00000160446ENSMUST00000161626ENSMUSG00000100868ENSMUST00000186343
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NO_0001ENSG00000040341ENST00000355780ENST00000519961ENST00000520945ENST00000521210ENST00000522509ENST00000522695ENST00000524300ENSG00000253273ENST00000519383ENSG00000253302ENST00000517604ENST00000522703ENSG00000253383ENST00000522790ENSG00000254105ENST00000521543ENSG00000254273ENST00000523233ENSG00000254538ENST00000533978ENST00000534723ENSG00000272469ENST00000607344CIL_0001NO_0002ENSMUSG00000025920ENSMUST00000027052ENSMUST00000054668ENSMUST00000115359ENSMUST00000115360ENSMUST00000128957ENSMUST00000131257ENSMUST00000159558ENSMUST00000162007ENSMUST00000162435ENSMUST00000162751ENSMUSG00000025939ENSMUST00000117146ENSMUST00000133639ENSMUST00000136455ENSMUSG00000089982ENSMUST00000159190ENSMUST00000160446ENSMUST00000161626ENSMUSG00000100868ENSMUST00000186343
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000040341 ENST00000355780 1.944±0.00 2.725±0.00 1.104±0.00 10.836±0.00 2.791±0.00 1.729±0.01 N/A 1.899±0.00 1.484±0.00 3.729±1.05 N/A 3.122±0.64 2.171±0.83 3.160±0.00
ENST00000517542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519961 N/A N/A N/A N/A N/A 1.411±0.00 2.005±0.00 2.032±0.00 0.877±0.00 N/A N/A N/A 1.197±0.00 N/A
ENST00000520872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.620±0.00 N/A N/A
ENST00000521210 N/A N/A N/A N/A N/A N/A 5.849±2.61 N/A N/A N/A 3.237±0.00 N/A N/A N/A
ENST00000521293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522509 N/A N/A 1.746±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522695 3.250±0.00 N/A N/A N/A 4.769±0.00 2.962±0.00 8.209±0.00 5.126±0.00 N/A N/A 4.397±1.49 2.879±0.00 2.142±0.02 N/A
ENST00000522818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524300 N/A N/A N/A N/A 4.112±0.00 N/A 5.144±0.00 N/A N/A N/A N/A N/A 2.144±0.00 N/A
ENSG00000253273 ENST00000519383 N/A 0.059±0.00 0.147±0.00 0.034±0.02 0.087±0.03 0.325±0.00 0.137±0.10 0.114±0.00 0.114±0.09 0.089±0.00 0.417±0.00 0.069±0.05 N/A 0.112±0.00
ENSG00000253302 ENST00000517604 0.029±0.00 0.129±0.00 N/A 0.168±0.00 0.110±0.02 0.060±0.00 N/A 0.124±0.06 0.098±0.09 0.076±0.03 0.006±0.00 0.081±0.05 N/A 0.133±0.09
ENST00000522703 0.049±0.00 N/A N/A 0.144±0.07 0.232±0.00 N/A 0.208±0.00 N/A 0.093±0.00 0.138±0.00 0.069±0.00 0.078±0.00 0.086±0.01 0.049±0.00
ENSG00000253383 ENST00000522790 N/A 0.181±0.00 N/A N/A 1.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254105 ENST00000521543 N/A 0.085±0.00 N/A 0.713±0.00 N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A N/A
ENSG00000254273 ENST00000523233 N/A N/A 0.789±0.00 0.538±0.00 0.923±0.85 4.259±0.00 0.405±0.37 0.626±0.49 0.194±0.00 N/A N/A 0.199±0.00 0.207±0.00 0.204±0.00
ENSG00000254538 ENST00000533978 N/A 0.073±0.00 0.690±0.00 0.264±0.00 0.072±0.00 N/A 0.032±0.00 N/A 0.827±0.00 N/A N/A 0.109±0.00 0.107±0.00 0.100±0.00
ENST00000534723 0.112±0.00 0.115±0.00 N/A 0.113±0.03 0.038±0.00 N/A 0.171±0.00 0.769±0.00 N/A N/A N/A 3.184±0.00 N/A 0.138±0.00
ENSG00000272469 ENST00000607344 N/A 0.233±0.00 N/A 0.282±0.00 N/A 1.589±0.00 N/A 0.487±0.00 N/A 1.406±0.78 N/A 0.399±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025920 ENSMUST00000027052 0.937±0.06 0.869±0.20 1.901±0.00 9.521±1.87 0.914±0.35 0.643±0.21 4.504±1.37 1.572±0.44 0.508±0.00 N/A 7.063±1.13 0.608±0.00 0.861±0.28 0.285±0.08
ENSMUST00000054668 N/A N/A N/A N/A 1.051±0.45 N/A N/A N/A N/A N/A N/A 1.547±0.58 N/A N/A
ENSMUST00000115359 N/A N/A N/A N/A N/A 0.803±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115360 1.504±0.00 1.119±0.00 2.291±0.17 25.682±4.40 1.781±0.57 1.675±0.93 N/A N/A 0.956±0.47 1.900±0.12 N/A 15.408±8.39 0.912±0.00 0.862±0.24
ENSMUST00000127420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128957 0.689±0.00 0.461±0.00 0.870±0.18 N/A 1.381±0.00 0.430±0.00 1.998±0.31 N/A 0.312±0.06 N/A N/A N/A 0.643±0.31 0.017±0.00
ENSMUST00000131257 N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A 0.363±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159558 N/A 0.722±0.00 N/A N/A N/A 0.968±0.00 N/A N/A N/A N/A N/A N/A N/A 0.216±0.00
ENSMUST00000162007 0.696±0.20 N/A 4.065±0.59 13.253±1.70 0.752±0.00 0.484±0.00 N/A N/A 0.667±0.19 N/A 2.389±0.22 3.340±1.40 1.780±0.94 0.368±0.22
ENSMUST00000162435 N/A N/A N/A 6.144±0.00 N/A N/A N/A N/A N/A N/A N/A 1.053±0.27 2.143±0.95 0.255±0.00
ENSMUST00000162627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162751 0.673±0.37 0.738±0.11 N/A N/A 0.594±0.03 0.662±0.19 1.626±0.43 0.915±0.25 0.339±0.12 0.440±0.00 2.511±0.44 N/A 1.294±0.00 N/A
ENSMUSG00000025939 ENSMUST00000117146 10.644±3.22 1.789±0.76 17.077±2.97 10.256±5.54 6.287±2.14 1.885±0.69 3.572±0.34 6.726±0.83 5.290±2.06 5.640±1.25 2.064±0.28 5.154±3.26 6.654±2.85 14.325±6.10
ENSMUST00000132919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133639 N/A 1.611±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.485±0.00 9.641±0.00
ENSMUST00000136455 N/A 1.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089982 ENSMUST00000159190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A
ENSMUST00000160446 0.085±0.03 0.597±0.06 0.139±0.00 N/A 0.357±0.00 0.271±0.00 N/A 0.210±0.12 0.059±0.03 0.155±0.00 0.114±0.00 0.260±0.11 0.031±0.00 11.388±6.03
ENSMUST00000161626 N/A N/A 0.125±0.00 0.108±0.00 N/A N/A N/A 0.157±0.00 N/A N/A N/A N/A N/A 34.840±5.88
ENSMUSG00000100868 ENSMUST00000186343 N/A N/A 0.033±0.00 0.072±0.04 N/A 0.039±0.00 0.032±0.02 0.048±0.03 0.029±0.02 N/A 0.032±0.00 0.105±0.06 0.020±0.01 0.033±0.00

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