C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: staufen (RNA binding protein) homolog 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025920 Stau2 10090 - 1:16228674-16520112 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027052 Stau2-003 16228810-16519306 protein_coding
  ENSMUST00000054668 Stau2-013 16228801-16519228 protein_coding
  ENSMUST00000115359 Stau2-002 16459715-16519260 protein_coding
  ENSMUST00000115360 Stau2-007 16344198-16375395 processed_transcript
  ENSMUST00000127420 Stau2-005 16344299-16519253 nonsense_mediated_decay
  ENSMUST00000128957 Stau2-006 16343486-16519247 protein_coding
  ENSMUST00000131257 Stau2-015 16343571-16520067 protein_coding
  ENSMUST00000144138 Stau2-017 16460213-16520020 protein_coding
  ENSMUST00000145092 Stau2-011 16460104-16520021 protein_coding
  ENSMUST00000149320 Stau2-014 16345594-16519307 protein_coding
  ENSMUST00000151888 Stau2-010 16394143-16519270 protein_coding
  ENSMUST00000153966 Stau2-008 16440442-16520080 protein_coding
  ENSMUST00000159558 Stau2-016 16343407-16519211 protein_coding
  ENSMUST00000162007 Stau2-004 16344291-16519240 protein_coding
  ENSMUST00000162435 Stau2-009 16228816-16520112 protein_coding
  ENSMUST00000162627 Stau2-012 16228804-16519228 protein_coding
  ENSMUST00000162751 Stau2-001 16228674-16519306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027052ENSMUST00000054668ENSMUST00000115359ENSMUST00000115360ENSMUST00000128957ENSMUST00000131257ENSMUST00000159558ENSMUST00000162007ENSMUST00000162435ENSMUST00000162751
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027052 0.937±0.06 0.869±0.20 1.901±0.00 9.521±1.87 0.914±0.35 0.643±0.21 4.504±1.37 1.572±0.44 0.508±0.00 N/A 7.063±1.13 0.608±0.00 0.861±0.28 0.285±0.08
ENSMUST00000054668 N/A N/A N/A N/A 1.051±0.45 N/A N/A N/A N/A N/A N/A 1.547±0.58 N/A N/A
ENSMUST00000115359 N/A N/A N/A N/A N/A 0.803±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115360 1.504±0.00 1.119±0.00 2.291±0.17 25.682±4.40 1.781±0.57 1.675±0.93 N/A N/A 0.956±0.47 1.900±0.12 N/A 15.408±8.39 0.912±0.00 0.862±0.24
ENSMUST00000128957 0.689±0.00 0.461±0.00 0.870±0.18 N/A 1.381±0.00 0.430±0.00 1.998±0.31 N/A 0.312±0.06 N/A N/A N/A 0.643±0.31 0.017±0.00
ENSMUST00000131257 N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A 0.363±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159558 N/A 0.722±0.00 N/A N/A N/A 0.968±0.00 N/A N/A N/A N/A N/A N/A N/A 0.216±0.00
ENSMUST00000162007 0.696±0.20 N/A 4.065±0.59 13.253±1.70 0.752±0.00 0.484±0.00 N/A N/A 0.667±0.19 N/A 2.389±0.22 3.340±1.40 1.780±0.94 0.368±0.22
ENSMUST00000162435 N/A N/A N/A 6.144±0.00 N/A N/A N/A N/A N/A N/A N/A 1.053±0.27 2.143±0.95 0.255±0.00
ENSMUST00000162751 0.673±0.37 0.738±0.11 N/A N/A 0.594±0.03 0.662±0.19 1.626±0.43 0.915±0.25 0.339±0.12 0.440±0.00 2.511±0.44 N/A 1.294±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D6 CIL_0001D6_0002 CGP 1:16105774-16520112
CIL_0001NO CIL_0001NO_0002 CGP 1:16228674-16619489

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005874 IEA microtubule
GO:0006810 IEA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026801 stau2 staufen, RNA binding protein, homolog 2 (Drosophila) protein_coding Danio_rerio
ENSG00000040341 STAU2 staufen double-stranded RNA binding protein 2 protein_coding Homo_sapiens

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