C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 3 (rhombotin-like 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616247 LMO3-204 ENSG00000048540 9606 - 12:16548373-16600860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungTestisENST00000616247
Transcript ID Breast Colon Heart Kidney Lung Testis
ENST00000616247 2.224±0.94 7.568±0.00 0.351±0.00 0.070±0.00 1.861±0.00 0.517±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_00098O CIL_00098O_0001 VISTA 12:16157111-16759002
CIL_0005FD CIL_0005FD_0001 CGP 12:16188485-16609259
CIL_0009BE CIL_0009BE_0001 VISTA 12:16262381-16863426
CIL_0005FE CIL_0005FE_0001 CGP 12:16347142-16610594
CIL_0008KE CIL_0008KE_0001 VISTA 12:16416099-17018481
CIL_0008XY CIL_0008XY_0001 VISTA 12:16487774-17089388

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160050 Lmo3-008 nonsense_mediated_decay Mus_musculus 0 1236
ENSMUST00000067437 Lmo3-006 nonsense_mediated_decay Mus_musculus 0 1236
ENSMUST00000162772 Lmo3-001 protein_coding Mus_musculus 0 1020
ENSMUST00000163065 Lmo3-004 protein_coding Mus_musculus 0 1020
ENSMUST00000163024 Lmo3-002 protein_coding Mus_musculus 0 695
ENSMUST00000161450 Lmo3-007 protein_coding Mus_musculus 0 688
ENSMUST00000162932 Lmo3-003 protein_coding Mus_musculus 0 222
ENSMUST00000162185 Lmo3-005 protein_coding Mus_musculus 0 222
ENSDART00000003583 lmo3-001 protein_coding Danio_rerio 7e-19 100

Loading