C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: LIM domain only 3 (rhombotin-like 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447609 LMO3-010 ENSG00000048540 9606 - 12:16548421-16606800 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLungOvaryENST00000447609
Transcript ID Brain Heart Kidney Lung Ovary
ENST00000447609 12.108±0.00 0.832±0.00 0.934±0.00 1.472±0.00 0.418±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_00098O CIL_00098O_0001 VISTA 12:16157111-16759002
CIL_0005FD CIL_0005FD_0001 CGP 12:16188485-16609259
CIL_0009BE CIL_0009BE_0001 VISTA 12:16262381-16863426
CIL_0005FE CIL_0005FE_0001 CGP 12:16347142-16610594
CIL_0008KE CIL_0008KE_0001 VISTA 12:16416099-17018481
CIL_0008XY CIL_0008XY_0001 VISTA 12:16487774-17089388

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0035360 IDA positive regulation of peroxisome proliferator activated receptor signaling pathway
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0070373 IDA negative regulation of ERK1 and ERK2 cascade
GO:2000324 IDA positive regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162772 Lmo3-001 protein_coding Mus_musculus 0 1349
ENSMUST00000163065 Lmo3-004 protein_coding Mus_musculus 0 1339
ENSMUST00000163024 Lmo3-002 protein_coding Mus_musculus 0 1092
ENSMUST00000161450 Lmo3-007 protein_coding Mus_musculus 0 1085
ENSMUST00000160050 Lmo3-008 nonsense_mediated_decay Mus_musculus 0 1020
ENSMUST00000067437 Lmo3-006 nonsense_mediated_decay Mus_musculus 0 1020
ENSMUST00000162185 Lmo3-005 protein_coding Mus_musculus 0 590
ENSMUST00000162932 Lmo3-003 protein_coding Mus_musculus 0 401
ENSDART00000003583 lmo3-001 protein_coding Danio_rerio 8e-19 100

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