C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 13 homolog D (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048707 VPS13D 9606 + 1:12230067-12512047 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000011700 VPS13D-014 12277121-12510361 protein_coding
  ENST00000460333 VPS13D-002 12299281-12373848 retained_intron
  ENST00000466732 VPS13D-010 12400310-12403948 nonsense_mediated_decay
  ENST00000469054 VPS13D-009 12344865-12349249 processed_transcript
  ENST00000473099 VPS13D-012 12497226-12506907 retained_intron
  ENST00000476045 VPS13D-013 12407254-12416827 processed_transcript
  ENST00000476169 VPS13D-007 12244424-12249603 processed_transcript
  ENST00000481484 VPS13D-011 12409838-12416827 processed_transcript
  ENST00000487188 VPS13D-004 12311526-12337988 processed_transcript
  ENST00000489961 VPS13D-008 12253734-12257955 processed_transcript
  ENST00000543710 VPS13D-005 12367670-12512047 processed_transcript
  ENST00000543766 VPS13D-006 12464940-12512047 protein_coding
  ENST00000613099 VPS13D-003 12230067-12512047 protein_coding
  ENST00000620676 VPS13D-001 12230067-12512047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000011700ENST00000543710ENST00000543766ENST00000613099ENST00000620676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000011700 2.084±0.00 0.760±0.00 1.569±0.00 1.914±0.00 1.197±0.09 2.254±1.07 1.729±0.22 1.954±0.00 0.604±0.00 0.690±0.00 2.317±0.00 1.336±0.60 0.619±0.11 1.477±0.26
ENST00000543710 N/A N/A N/A N/A N/A N/A 3.454±0.00 3.979±0.00 N/A 2.804±0.00 N/A 3.575±0.00 1.505±0.50 N/A
ENST00000543766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.221±0.00 N/A
ENST00000613099 1.669±0.00 1.151±0.00 1.290±0.00 2.590±0.05 0.943±0.00 1.253±0.33 2.786±0.00 0.999±0.00 2.083±1.72 0.771±0.00 2.533±0.01 1.053±0.32 0.564±0.16 0.927±0.00
ENST00000620676 N/A N/A N/A N/A 2.817±0.00 N/A N/A 0.809±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017986 vps13d vacuolar protein sorting 13D (yeast) protein_coding Danio_rerio
ENSMUSG00000020220 Vps13d vacuolar protein sorting 13 D (yeast) protein_coding Mus_musculus

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