C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 13 D (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020220 Vps13d 10090 - 4:144972622-145195005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020441 Vps13d-001 144972626-145190666 protein_coding
  ENSMUST00000036579 Vps13d-002 144972622-145195005 protein_coding
  ENSMUST00000097796 Vps13d-201 144972623-144974683 protein_coding
  ENSMUST00000130704 Vps13d-003 144972626-145091950 nonsense_mediated_decay
  ENSMUST00000132700 Vps13d-004 145176360-145194995 retained_intron
  ENSMUST00000141208 Vps13d-007 144980298-145054143 retained_intron
  ENSMUST00000142308 Vps13d-008 145052982-145058198 retained_intron
  ENSMUST00000144835 Vps13d-005 145016759-145051034 processed_transcript
  ENSMUST00000147511 Vps13d-006 144974926-144983961 processed_transcript
  ENSMUST00000155670 Vps13d-009 145069968-145072602 retained_intron
  ENSMUST00000185113 Vps13d-010 144974596-145155486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020441ENSMUST00000036579ENSMUST00000130704ENSMUST00000147511ENSMUST00000185113
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020441 2.620±0.14 2.917±0.45 1.509±0.00 1.232±0.32 2.431±1.15 2.916±1.09 1.852±0.18 1.825±0.70 0.879±0.50 1.426±0.38 N/A 3.207±0.85 0.566±0.36 0.535±0.24
ENSMUST00000036579 N/A N/A N/A 1.780±0.36 N/A N/A 1.062±0.00 0.654±0.00 0.583±0.00 N/A 0.804±0.00 4.375±0.00 0.350±0.07 0.424±0.13
ENSMUST00000130704 3.339±0.42 3.007±0.63 N/A 1.682±0.36 3.505±1.86 N/A 3.064±0.69 2.524±0.08 1.548±0.49 N/A 2.623±0.41 4.763±0.00 0.679±0.24 N/A
ENSMUST00000147511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.913±2.32 N/A
ENSMUST00000185113 4.395±0.26 5.572±1.50 2.454±0.00 1.891±0.26 4.253±1.03 5.730±1.22 2.614±0.24 2.617±0.88 1.594±0.65 3.453±0.52 1.735±0.36 4.947±1.40 1.166±0.64 1.131±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MQ CIL_0003MQ_0002 CGP 4:144892827-145195005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017986 vps13d vacuolar protein sorting 13D (yeast) protein_coding Danio_rerio
ENSG00000048707 VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) protein_coding Homo_sapiens

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