C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 13 homolog D (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000011700 VPS13D-014 ENSG00000048707 9606 + 1:12277121-12510361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000011700
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000011700 2.084±0.00 0.760±0.00 1.569±0.00 1.914±0.00 1.197±0.09 2.254±1.07 1.729±0.22 1.954±0.00 0.604±0.00 0.690±0.00 2.317±0.00 1.336±0.60 0.619±0.11 1.477±0.26

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185113 Vps13d-010 protein_coding Mus_musculus 0 11420
ENSMUST00000036579 Vps13d-002 protein_coding Mus_musculus 0 11420
ENSMUST00000020441 Vps13d-001 protein_coding Mus_musculus 0 5827
ENSMUST00000130704 Vps13d-003 nonsense_mediated_decay Mus_musculus 0 3773
ENSMUST00000141208 Vps13d-007 retained_intron Mus_musculus 0 968
ENSMUST00000144835 Vps13d-005 processed_transcript Mus_musculus 0 739
ENSMUST00000147511 Vps13d-006 processed_transcript Mus_musculus 0 652

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