C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: R3H domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000429703 R3HDM1-007 ENSG00000048991 9606 + 2:135638733-135725265 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverMuscleOvaryPlacentaTestisENST00000429703
Transcript ID Adrenal Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENST00000429703 1.140±0.00 6.596±1.13 1.152±0.00 1.525±0.00 0.646±0.00 3.062±0.14 3.144±1.88 1.646±0.00 9.047±4.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S4 CIL_0003S4_0002 CGP 2:135136916-135725270
CIL_0006VO CIL_0006VO_0001 CGP 2:135531455-135785055

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036288 R3hdm1-001 protein_coding Mus_musculus 0 3853
ENSMUST00000190288 R3hdm1-006 retained_intron Mus_musculus 0 2333
ENSMUST00000188570 R3hdm1-007 retained_intron Mus_musculus 0 1430
ENSMUST00000190056 R3hdm1-016 protein_coding Mus_musculus 0 907
ENSMUST00000187023 R3hdm1-011 protein_coding Mus_musculus 0 907
ENSMUST00000187900 R3hdm1-004 protein_coding Mus_musculus 0 907
ENSMUST00000185471 R3hdm1-005 retained_intron Mus_musculus 0 531
ENSMUST00000185853 R3hdm1-015 protein_coding Mus_musculus 0 385
ENSMUST00000191016 R3hdm1-002 retained_intron Mus_musculus 0 385
ENSMUST00000189982 R3hdm1-008 retained_intron Mus_musculus 0 335
ENSDART00000091982 r3hdm1-201 protein_coding Danio_rerio 3e-33 148
ENSMUST00000105250 R3hdm2-202 protein_coding Mus_musculus 4e-17 95
ENSMUST00000077046 R3hdm2-201 protein_coding Mus_musculus 4e-17 95
ENSMUST00000171823 R3hdm2-018 processed_transcript Mus_musculus 4e-17 95
ENSMUST00000169888 R3hdm2-004 protein_coding Mus_musculus 4e-17 95
ENSMUST00000105249 R3hdm2-006 protein_coding Mus_musculus 4e-17 95
ENSMUST00000105251 R3hdm2-005 protein_coding Mus_musculus 4e-17 95
ENSMUST00000164161 R3hdm2-008 nonsense_mediated_decay Mus_musculus 4e-17 95
ENSMUST00000164831 R3hdm2-002 protein_coding Mus_musculus 4e-17 95
ENSMUST00000170336 R3hdm2-007 protein_coding Mus_musculus 4e-17 95
ENSMUST00000064793 R3hdm2-003 protein_coding Mus_musculus 4e-17 95
ENSMUST00000166820 R3hdm2-001 protein_coding Mus_musculus 4e-17 95

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