C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: R3H domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409478 R3HDM1-004 ENSG00000048991 9606 + 2:135531501-135725266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000409478
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000409478 2.883±0.00 1.369±0.00 1.777±0.51 1.057±0.32 0.913±0.00 2.162±0.00 0.591±0.18 0.585±0.00 2.652±1.65 1.220±0.59 3.660±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S4 CIL_0003S4_0002 CGP 2:135136916-135725270
CIL_0006VO CIL_0006VO_0001 CGP 2:135531455-135785055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036288 R3hdm1-001 protein_coding Mus_musculus 0 2824
ENSMUST00000190288 R3hdm1-006 retained_intron Mus_musculus 0 2335
ENSMUST00000191016 R3hdm1-002 retained_intron Mus_musculus 0 2146
ENSMUST00000188381 R3hdm1-003 protein_coding Mus_musculus 0 1622
ENSMUST00000188570 R3hdm1-007 retained_intron Mus_musculus 0 1432
ENSMUST00000187023 R3hdm1-011 protein_coding Mus_musculus 0 1389
ENSMUST00000187900 R3hdm1-004 protein_coding Mus_musculus 0 1389
ENSMUST00000189317 R3hdm1-013 protein_coding Mus_musculus 0 953
ENSMUST00000185471 R3hdm1-005 retained_intron Mus_musculus 0 773
ENSMUST00000190056 R3hdm1-016 protein_coding Mus_musculus 0 737
ENSMUST00000185853 R3hdm1-015 protein_coding Mus_musculus 0 715
ENSMUST00000191274 R3hdm1-014 retained_intron Mus_musculus 0 536
ENSMUST00000187557 R3hdm1-012 protein_coding Mus_musculus 0 499
ENSMUST00000189982 R3hdm1-008 retained_intron Mus_musculus 0 337
ENSDART00000091982 r3hdm1-201 protein_coding Danio_rerio 0 263
ENSMUST00000187605 R3hdm1-009 retained_intron Mus_musculus 0 195
ENSMUST00000185389 R3hdm1-010 retained_intron Mus_musculus 2e-35 156
ENSMUST00000105250 R3hdm2-202 protein_coding Mus_musculus 5e-17 95
ENSMUST00000077046 R3hdm2-201 protein_coding Mus_musculus 5e-17 95
ENSMUST00000171823 R3hdm2-018 processed_transcript Mus_musculus 5e-17 95
ENSMUST00000169888 R3hdm2-004 protein_coding Mus_musculus 5e-17 95
ENSMUST00000105249 R3hdm2-006 protein_coding Mus_musculus 5e-17 95
ENSMUST00000105251 R3hdm2-005 protein_coding Mus_musculus 5e-17 95
ENSMUST00000164161 R3hdm2-008 nonsense_mediated_decay Mus_musculus 5e-17 95
ENSMUST00000164831 R3hdm2-002 protein_coding Mus_musculus 5e-17 95
ENSMUST00000170336 R3hdm2-007 protein_coding Mus_musculus 5e-17 95
ENSMUST00000064793 R3hdm2-003 protein_coding Mus_musculus 5e-17 95
ENSMUST00000166820 R3hdm2-001 protein_coding Mus_musculus 5e-17 95

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