C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, N
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054356 PTPRN 9606 - 2:219289623-219309648 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295718 PTPRN-001 219289623-219309573 protein_coding
  ENST00000409251 PTPRN-003 219289623-219309498 protein_coding
  ENST00000412847 PTPRN-012 219302485-219309009 protein_coding
  ENST00000423636 PTPRN-021 219289841-219308984 protein_coding
  ENST00000440552 PTPRN-011 219302618-219309173 protein_coding
  ENST00000442029 PTPRN-013 219302685-219309007 protein_coding
  ENST00000443981 PTPRN-020 219289649-219296341 protein_coding
  ENST00000446182 PTPRN-008 219302487-219309648 protein_coding
  ENST00000451506 PTPRN-009 219302744-219309538 protein_coding
  ENST00000460801 PTPRN-007 219289625-219292896 retained_intron
  ENST00000462351 PTPRN-006 219289625-219308197 retained_intron
  ENST00000468454 PTPRN-014 219307018-219308923 processed_transcript
  ENST00000476930 PTPRN-016 219302663-219304141 retained_intron
  ENST00000477819 PTPRN-015 219307528-219308340 retained_intron
  ENST00000484986 PTPRN-010 219307483-219309402 retained_intron
  ENST00000486480 PTPRN-017 219297423-219299572 retained_intron
  ENST00000489650 PTPRN-018 219297979-219299492 retained_intron
  ENST00000497977 PTPRN-019 219290052-219296758 processed_transcript
  ENST00000606213 PTPRN-005 219302768-219309381 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungOvaryPlacentaTestisENST00000295718ENST00000409251ENST00000423636ENST00000443981ENST00000462351ENST00000497977
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000295718 N/A N/A 4.109±0.00 N/A 0.560±0.00 N/A N/A N/A N/A N/A
ENST00000409251 N/A N/A 13.522±10.00 0.110±0.00 2.331±0.00 N/A N/A 0.015±0.01 0.185±0.06 0.096±0.06
ENST00000423636 N/A N/A 17.053±0.00 0.028±0.00 0.110±0.00 N/A 0.057±0.00 0.304±0.18 N/A N/A
ENST00000443981 N/A 0.191±0.00 N/A N/A N/A 0.053±0.00 0.071±0.00 0.468±0.33 0.600±0.40 0.378±0.11
ENST00000462351 N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A 0.017±0.00
ENST00000497977 0.039±0.00 N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A 0.364±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006NW CIL_0006NW_0001 CGP 2:219279267-219309648
CIL_0006NX CIL_0006NX_0001 CGP 2:219289623-219333177

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000302 IDA response to reactive oxygen species
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0009749 IEA response to glucose
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0019221 IEA cytokine-mediated signaling pathway
GO:0030507 IPI spectrin binding
GO:0032868 IEA response to insulin
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043627 IEA response to estrogen
GO:0051020 IEA GTPase binding
GO:0051591 IEA response to cAMP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058646 ptprna protein tyrosine phosphatase, receptor type, Na protein_coding Danio_rerio
ENSDARG00000077047 ptprnb protein tyrosine phosphatase, receptor type, Nb protein_coding Danio_rerio
ENSMUSG00000026204 Ptprn protein tyrosine phosphatase, receptor type, N protein_coding Mus_musculus

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