C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409251 PTPRN-003 ENSG00000054356 9606 - 2:219289623-219309498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryPlacentaTestisENST00000409251
Transcript ID Brain Breast Colon Ovary Placenta Testis
ENST00000409251 13.522±10.00 0.110±0.00 2.331±0.00 0.015±0.01 0.185±0.06 0.096±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_0006NW CIL_0006NW_0001 CGP 2:219279267-219309648
CIL_0006NX CIL_0006NX_0001 CGP 2:219289623-219333177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000302 IDA response to reactive oxygen species
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030507 IPI spectrin binding
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027404 Ptprn-001 protein_coding Mus_musculus 0 1941
ENSMUST00000189769 Ptprn-004 protein_coding Mus_musculus 0 399
ENSMUST00000186178 Ptprn-005 protein_coding Mus_musculus 0 399
ENSMUST00000185849 Ptprn-003 protein_coding Mus_musculus 0 388
ENSMUST00000188401 Ptprn-006 processed_transcript Mus_musculus 0 344

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