C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, N
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026204 Ptprn 10090 - 1:75247027-75264502 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027404 Ptprn-001 75247027-75264213 protein_coding
  ENSMUST00000185849 Ptprn-003 75258559-75264502 protein_coding
  ENSMUST00000186178 Ptprn-005 75258491-75263907 protein_coding
  ENSMUST00000187216 Ptprn-007 75256858-75257997 retained_intron
  ENSMUST00000188401 Ptprn-006 75258583-75264208 processed_transcript
  ENSMUST00000189769 Ptprn-004 75258491-75264050 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027404ENSMUST00000187216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027404 0.029±0.01 16.400±3.43 0.037±0.00 38.638±42.19 0.052±0.02 2.333±0.88 0.236±0.02 0.168±0.03 0.033±0.02 0.390±0.20 0.060±0.03 0.576±0.37 0.554±0.29 0.321±0.00
ENSMUST00000187216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A 1.223±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006NW CIL_0006NW_0002 CGP 1:75236406-75264502
CIL_0006NX CIL_0006NX_0002 CGP 1:75247027-75278415

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000302 IEA response to reactive oxygen species
GO:0004725 TAS protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007185 TAS transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0009749 IEA response to glucose
GO:0016020 TAS membrane
GO:0019221 IEA cytokine-mediated signaling pathway
GO:0030507 IEA spectrin binding
GO:0032868 IEA response to insulin
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043627 IEA response to estrogen
GO:0051020 IEA GTPase binding
GO:0051591 IEA response to cAMP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058646 ptprna protein tyrosine phosphatase, receptor type, Na protein_coding Danio_rerio
ENSDARG00000077047 ptprnb protein tyrosine phosphatase, receptor type, Nb protein_coding Danio_rerio
ENSG00000054356 PTPRN protein tyrosine phosphatase, receptor type, N protein_coding Homo_sapiens

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