C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265069 ZFR-001 ENSG00000056097 9606 - 5:32354350-32444761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265069 13.459±0.00 13.703±0.00 5.306±0.00 15.816±10.80 13.592±2.99 12.900±8.18 8.322±5.83 11.769±7.82 8.183±2.83 9.639±0.00 7.467±5.46 13.109±5.39 10.626±0.78 10.140±5.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SV CIL_0002SV_0002 CGP 5:32226994-32444761
CIL_0002SE CIL_0002SE_0002 CGP 5:32354350-32604079

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122941 Zfr-001 protein_coding Mus_musculus 0 5984
ENSMUST00000156752 Zfr-008 protein_coding Mus_musculus 0 1230
ENSMUST00000128475 Zfr-005 protein_coding Mus_musculus 0 1107
ENSMUST00000134277 Zfr-006 protein_coding Mus_musculus 0 867
ENSMUST00000157034 Zfr-002 nonsense_mediated_decay Mus_musculus 0 841
ENSMUST00000155054 Zfr-007 nonsense_mediated_decay Mus_musculus 0 712
ENSMUST00000140787 Zfr-003 processed_transcript Mus_musculus 0 710
ENSDART00000129415 zfr-201 protein_coding Danio_rerio 0 652
ENSDART00000074789 zfr-001 protein_coding Danio_rerio 0 652
ENSMUST00000124621 Zfr-004 processed_transcript Mus_musculus 0 331
ENSMUST00000147492 Zfr-009 retained_intron Mus_musculus 0 220

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