C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NCK-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360982 NCKAP1-002 ENSG00000061676 9606 - 2:182924877-183038858 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360982 30.154±0.00 23.034±0.00 8.616±0.00 41.475±9.27 19.520±8.23 31.050±18.55 23.531±18.01 22.195±14.57 15.596±6.63 21.004±4.76 22.666±17.40 25.854±2.15 14.855±2.49 24.261±9.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YU CIL_0000YU_0001 CGP 2:182833275-183038858
CIL_0000Q8 CIL_0000Q8_0001 CGP 2:182909115-183100005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001756 IEA somitogenesis
GO:0001843 IEA neural tube closure
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006915 TAS apoptotic process
GO:0007354 IEA zygotic determination of anterior/posterior axis, embryo
GO:0007417 TAS central nervous system development
GO:0007492 IEA endoderm development
GO:0008078 IEA mesodermal cell migration
GO:0010172 IEA embryonic body morphogenesis
GO:0010592 IMP positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0016601 IDA Rac protein signal transduction
GO:0030027 IEA lamellipodium
GO:0030032 IEA lamellipodium assembly
GO:0030903 IEA notochord development
GO:0030950 IEA establishment or maintenance of actin cytoskeleton polarity
GO:0031209 IDA SCAR complex
GO:0032403 IDA protein complex binding
GO:0032880 IEA regulation of protein localization
GO:0035050 IEA embryonic heart tube development
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042074 IEA cell migration involved in gastrulation
GO:0045087 TAS innate immune response
GO:0045175 IEA basal protein localization
GO:0045176 IEA apical protein localization
GO:0048339 IEA paraxial mesoderm development
GO:0048340 IEA paraxial mesoderm morphogenesis
GO:0048365 IDA Rac GTPase binding
GO:0048570 IEA notochord morphogenesis
GO:0048617 IEA embryonic foregut morphogenesis
GO:0050821 IEA protein stabilization
GO:0070062 IDA extracellular vesicular exosome
GO:2000601 IDA positive regulation of Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111760 Nckap1-002 protein_coding Mus_musculus 0 5289
ENSMUST00000028386 Nckap1-001 protein_coding Mus_musculus 0 5173
ENSDART00000132696 nckap1-001 protein_coding Danio_rerio 0 2060
ENSMUST00000131872 Nckap1-004 processed_transcript Mus_musculus 0 852
ENSMUST00000154793 Nckap1-003 processed_transcript Mus_musculus 0 597
ENSMUST00000134587 Nckap1-005 processed_transcript Mus_musculus 0 431

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